Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1045X
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    30   0.17 
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    29   0.23 
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    29   0.23 
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   1.2  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   5.0  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   5.0  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   6.6  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    24   8.7  

>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 76  ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTI 183
           A  +++N++P +V +     L   SGAN  KLK  I
Sbjct: 66  AESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAI 101


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 76  ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTI 183
           AS   + +MPT+VF +NG  +   +GAN   LK  +
Sbjct: 67  ASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKV 102


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 76  ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTI 183
           A+E  +++MP++   KNG  + +  GAN  KL+ +I
Sbjct: 64  AAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASI 99


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 140 STSRALTSTNSKQLSLNTSTIET 208
           STS  LT T+SK L+ NTS +++
Sbjct: 197 STSENLTPTSSKSLASNTSLVQS 219


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 340 QTQKMNILKFITDVKNIF*SFIKN 269
           ++ + N + ++TD +NIF +F+ N
Sbjct: 71  KSSESNSIDYLTDTQNIFPNFVNN 94


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 321 IFIFCVCSLWNAKNIGSVVISQFTISFSP 407
           + +  V  LW+ K  G   +S F +SFSP
Sbjct: 473 VLLVYVDGLWSVKTNGFRQLSLFILSFSP 501


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 192 VFKDSCFEFVDVSAREVDQLLAI 124
           VF+D  F FV  S    D LLA+
Sbjct: 427 VFRDDTFIFVSQSGETADSLLAL 449


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 168 FVDVSAREVDQLLAILNED-VRRHRVNVVLAGDVLALINVHLH 43
           F ++ AR  + ++ ++  D +RR  +N + A  ++  +  H H
Sbjct: 317 FANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAH 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,167
Number of Sequences: 5004
Number of extensions: 25746
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)