Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1045X
         (431 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    43   5e-06
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   3.5  
AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate phospho...    22   8.1  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    22   8.1  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    22   8.1  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 42.7 bits (96), Expect = 5e-06
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +1

Query: 76  ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           A++YNI SMPT++F+K    +  FSGAN +KL+  I +H
Sbjct: 67  AAQYNIASMPTFLFIKRKEVVGQFSGANAEKLENFIQQH 105


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 LKHKYHRD*SCTQPPMETKMELKKK 258
           LK KYH+     +   E K+E+KKK
Sbjct: 887 LKAKYHQRDKLLKQNDELKLEIKKK 911


>AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate
           phosphoribosyltransferase-like protein protein.
          Length = 519

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 136 LVDFSGANVDKLKTTILKHK 195
           +  F+G  +D+LKT +L+HK
Sbjct: 192 ITSFTG--IDELKTRLLQHK 209


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 70   PRTHQRPPSQRRWNLTFRRRS 8
            PR+ + PPS R   +  RRR+
Sbjct: 1111 PRSRRLPPSPRTTEMRRRRRN 1131


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 180 SCFEFVDVSAREVDQLLAILNEDVR--RHRVNVVLAGDVLALI 58
           + F  +  +ARE +  L I+ + V+  RH  N+V + D LA I
Sbjct: 14  AAFNLMWQTAREREVDLFIVADPVKNQRHNNNIVYSEDQLAAI 56


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,850
Number of Sequences: 2352
Number of extensions: 5849
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 35717724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)