Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1045X
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical pr...    36   0.013
U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical pr...    36   0.013
DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.     36   0.013
DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.     36   0.013
AF106589-2|AAC78230.1|  107|Caenorhabditis elegans Hypothetical ...    34   0.038
Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical pr...    31   0.47 
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    31   0.47 
AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical ...    31   0.47 
AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.     31   0.47 
AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-l...    30   0.62 
AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-l...    30   0.62 
AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine re...    30   0.62 
AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical...    30   0.62 
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    29   1.4  
U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical...    27   7.7  

>U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical
           protein B0228.5a protein.
          Length = 115

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 79  SEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           S+Y++  MPT++F KNG  +    G   D+L+  +L+H
Sbjct: 74  SKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111


>U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical
           protein B0228.5b protein.
          Length = 114

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 79  SEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           S+Y++  MPT++F KNG  +    G   D+L+  +L+H
Sbjct: 73  SKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 110


>DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.
          Length = 114

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 79  SEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           S+Y++  MPT++F KNG  +    G   D+L+  +L+H
Sbjct: 73  SKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 110


>DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.
          Length = 115

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 79  SEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           S+Y++  MPT++F KNG  +    G   D+L+  +L+H
Sbjct: 74  SKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111


>AF106589-2|AAC78230.1|  107|Caenorhabditis elegans Hypothetical
           protein Y44E3A.3 protein.
          Length = 107

 Score = 34.3 bits (75), Expect = 0.038
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 1   LDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTT 180
           ++E+AAE                    EY INSMPT++ + +G     FSGAN  K +  
Sbjct: 42  VEELAAEHKDRLSILKIDVDECDGVGEEYEINSMPTFLLIVDGIKKDQFSGANNTKFEEM 101

Query: 181 I 183
           +
Sbjct: 102 V 102


>Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 85  YNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           YNI++MPT++F+KN   +    GAN   +   I +H
Sbjct: 71  YNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
           protein C28H8.3 protein.
          Length = 1714

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 376 TTEPIFFAFQRLQTQKMNILKFITDVKNIF*SFIKNVYMFFFLIPS*FPSAAAYNF 209
           TTE + F+ ++L   K N+ +F    KNI   F  +V +F   I S     AA+++
Sbjct: 76  TTEVLNFSLEQLSMMKKNLAQFPCSYKNIISEF-ADVEIFLISIDSLIVECAAHSY 130


>AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 85  YNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           YNI++MPT++F+KN   +    GAN   +   I +H
Sbjct: 71  YNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106


>AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.
          Length = 542

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 85  YNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           YNI++MPT++F+KN   +    GAN   +   I +H
Sbjct: 7   YNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 42


>AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-like
           protein protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 76  ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           +SE  +NSMPT++  ++G  +    GA+   L+T + K+
Sbjct: 67  SSENGVNSMPTFMVFQSGVRVEQMKGADAKALETMVKKY 105


>AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-like
           protein TXL protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 76  ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           +SE  +NSMPT++  ++G  +    GA+   L+T + K+
Sbjct: 67  SSENGVNSMPTFMVFQSGVRVEQMKGADAKALETMVKKY 105


>AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein3 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 293 VFNVCNEFQDIHFLCL---QP-LECKKYWFCCNLSIHDI 397
           VFNV   F +I+FLCL   +P L  K Y+  C LS+  I
Sbjct: 19  VFNVLGLFGNINFLCLTYIKPALRSKSYYIQCALSVSHI 57


>AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical
           protein Y54E10A.3 protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 76  ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           +SE  +NSMPT++  ++G  +    GA+   L+T + K+
Sbjct: 67  SSENGVNSMPTFMVFQSGVRVEQMKGADAKALETMVKKY 105


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 76  ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
           A+ Y +N+MPT++   NG       GA+   L++ + K+
Sbjct: 67  AATYGVNAMPTFIAFVNGQKKATIQGADESGLRSMVAKY 105


>U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical
           protein F08D12.6 protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 303 SVMNFKIFIFCVCSLWNAKNIGSVVISQFTISF 401
           SVM +  F      LWN ++ GS++ ++F  +F
Sbjct: 68  SVMTYLSFYKYNFDLWNVQSCGSIIATEFDTNF 100


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 320 DIHFLCLQPLECKKYWFCCNLSIH 391
           D+H LC     C     CC L+IH
Sbjct: 568 DLHTLCPPDFTCSLSGKCCKLNIH 591


>AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical
           protein Y75B8A.34 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 297 LTSVMNFKIFIFCVCSLWNAKNIGSVVISQFTI 395
           + S++N  I +FCVC +W  KN G + +S F I
Sbjct: 53  VVSLINLVIQLFCVCFIW--KN-GYLKLSTFFI 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,262,165
Number of Sequences: 27780
Number of extensions: 143568
Number of successful extensions: 414
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)