Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1045X
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   7.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 84  LAGDVLALINVHLHND 37
           ++G V  LIN+HL +D
Sbjct: 169 ISGTVFDLINIHLFHD 184


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 426 DVKYELMARTIS*IERLQQNQY 361
           ++ +EL  + +S  ERLQ  QY
Sbjct: 424 EITWELDGKRLSNTERLQVGQY 445


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
          protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 99 RVNVVLAGDVLALINVHLHND 37
          ++ ++L   +LALINV   +D
Sbjct: 2  KIKILLFFTILALINVKAQDD 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,336
Number of Sequences: 438
Number of extensions: 1849
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)