Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1045X
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identica... 38 0.002
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 37 0.005
At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL) i... 34 0.048
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 33 0.063
At1g11530.1 68414.m01324 thioredoxin family protein similar to t... 32 0.15
At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1) i... 31 0.44
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 30 0.78
At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransfer... 28 2.4
At4g27050.2 68417.m03890 F-box family protein contains F-box dom... 28 3.1
At4g27050.1 68417.m03889 F-box family protein contains F-box dom... 28 3.1
At5g39520.1 68418.m04785 expressed protein predicted protein, Sy... 27 4.1
At3g27670.1 68416.m03455 expressed protein 27 4.1
At3g08710.1 68416.m01012 thioredoxin family protein similar to t... 27 4.1
At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38... 27 4.1
At3g56420.1 68416.m06275 thioredoxin family protein similar to t... 27 7.2
>At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identical
to SP|P29448 Thioredoxin H-type 1 (TRX-H-1) {Arabidopsis
thaliana}
Length = 114
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
AS++ I +MPT++F+K G L GA D+L++TI KH
Sbjct: 74 ASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
A E+ + +MPT+VF+K G + GAN + L+ I+KH
Sbjct: 75 AKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113
>At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL)
identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5)
{Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA
for thioredoxin GI:992965
Length = 118
Score = 33.9 bits (74), Expect = 0.048
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
A E+ + +MPT+VF+K G + GA D++ ++KH
Sbjct: 73 AQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 33.5 bits (73), Expect = 0.063
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILK 189
A E+N+ +MPT+V VK G + GA D+L+ + K
Sbjct: 93 AKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130
>At1g11530.1 68414.m01324 thioredoxin family protein similar to
thioredoxin H-type from Arabidopsis thaliana SP|P29448,
Nicotiana tabacum SP|Q07090; contains Pfam profile:
PF00085 Thioredoxin
Length = 118
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTI 183
AS+ + +MPT++F+K+G + GAN D++K +
Sbjct: 70 ASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105
>At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1)
identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3)
{Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA
for thioredoxin GI:992961
Length = 118
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKHK 195
A E+ + +MPT++F+K G GA +++ + KHK
Sbjct: 73 AEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHK 112
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 29.9 bits (64), Expect = 0.78
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
A+ +NI+S+PT+ F+++G + GA+ L+ I +H
Sbjct: 338 AASWNISSVPTFCFIRDGKEVDKVVGADKGSLEQKIAQH 376
>At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransferase
family protein / wax synthase family protein contains
similarity to wax synthase wax synthase - Simmondsia
chinensis, PID:g5020219 similar to wax synthase
[gi:5020219] from Simmondsia chinensis
Length = 435
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 324 FIFCVCSLWNAKNIGSVVISQFTISFSPLVRT 419
F FC C + +G VV++ + F PLVRT
Sbjct: 295 FEFCPCLILQVMVMGFVVVTAGWLFFPPLVRT 326
>At4g27050.2 68417.m03890 F-box family protein contains F-box domain
Pfam:PF00646
Length = 453
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 290 NVFNVCNEFQDIHFLCLQPLECKKYWFCCNLSI-HDIV-LAISS 415
N+ N+ + I L L P + +++CC+L + D+V L+I S
Sbjct: 288 NITNLIEAIRTIKILHLSPSSLEVFYYCCDLPVLEDLVNLSIES 331
>At4g27050.1 68417.m03889 F-box family protein contains F-box domain
Pfam:PF00646
Length = 453
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 290 NVFNVCNEFQDIHFLCLQPLECKKYWFCCNLSI-HDIV-LAISS 415
N+ N+ + I L L P + +++CC+L + D+V L+I S
Sbjct: 288 NITNLIEAIRTIKILHLSPSSLEVFYYCCDLPVLEDLVNLSIES 331
>At5g39520.1 68418.m04785 expressed protein predicted protein,
Synechocystis sp., PIR:S77152
Length = 230
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 135 LLAILNEDVRRHRVNVVLAG 76
+LA++ EDVRR+ N +LAG
Sbjct: 184 VLALVPEDVRRNMANAILAG 203
>At3g27670.1 68416.m03455 expressed protein
Length = 1841
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 195 LVFKDSCFEFVDVSAREVDQLLAILNE 115
+ ++ CF+F A E D+LLA L+E
Sbjct: 1469 ITLREECFKFSLAHASEFDELLAFLDE 1495
>At3g08710.1 68416.m01012 thioredoxin family protein similar to
thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
{Nicotiana tabacum}; contains Pfam profile: PF00085
Thioredoxin
Length = 140
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLKTTI 183
+S ++I + PT+ F+KNG + GAN +L+ +
Sbjct: 91 SSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126
>At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 148
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 82 EYNINSMPTYVFVKNG**LVDFSGANVDKLKTTILKH 192
E+N++++P VF+K G + G VD+L+ + K+
Sbjct: 107 EFNLSTLPAIVFMKRGREVDMVVGVKVDELERKLNKY 143
>At3g56420.1 68416.m06275 thioredoxin family protein similar to
thioredoxin [Nicotiana tabacum] GI:20047; contains Pfam
profile: PF00085 Thioredoxin
Length = 100
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 76 ASEYNINSMPTYVFVKNG**LVDFSGANVDKLK 174
++E+N+ + PT VF+K+G + GA +L+
Sbjct: 54 SNEWNVEATPTVVFLKDGRQMDKLVGAETSELQ 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,558,260
Number of Sequences: 28952
Number of extensions: 122591
Number of successful extensions: 309
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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