Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1045
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.76
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 1.8
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 27 2.3
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 4.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 4.0
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 4.0
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 7.1
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 7.1
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 7.1
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 9.3
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.3
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 409 PVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSGP 531
P N P++ T P+ Q TP+ P RAN NS P
Sbjct: 648 PSGQVNAPMS-QTPNPISFAYQHGTPLATPTMRANSFNSYP 687
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 422 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLITYVQK 318
ATS PFSL+ V P S ++ +PS Q+
Sbjct: 152 ATSANNPFSLSTDVNPSKPSSNVFSKPSFAAKAQQ 186
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 394 NENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSG 528
N NP + A P +S + L Q A +PI+ ANV ++G
Sbjct: 142 NVQSNPNNTAPFPSYSSNSLQLPTNQTADSPIINDHSTANVTSTG 186
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 421 ANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSGPR 534
A+ ++ ++T P ++ AST IVRP A G R
Sbjct: 257 ASGSISKNSTSPSKVKVNASTKIVRPVSAAQTVRPGSR 294
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 418 VANPPVATSTTGPLQIPQQASTP 486
+ P + STT P +PQ +STP
Sbjct: 397 ILKKPSSLSTTDPTLVPQSSSTP 419
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 424 NPPVATSTTGPLQIPQQASTPIVR 495
NP A+STTG I Q S P +R
Sbjct: 77 NPSAASSTTGENSISQTGSGPFLR 100
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 177 SSPFTASSTKRWKAWNRGIGPGTSLKQKR 263
SSPF+ +S RWK ++R Q R
Sbjct: 307 SSPFSKTSPSRWKIFHRFTSSNEKYDQTR 335
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 130 YSFKFSWRDDVLGGSGLRRTY 68
+ F DD GGSGL+R Y
Sbjct: 25 FGFNSKLLDDAFGGSGLKRGY 45
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +2
Query: 176 LFAFHGKLNEEMEGLESGHWSRDITK------AKTAFGRSETEM 289
++ FHG ++E++ L G W + K + T ++ETEM
Sbjct: 426 VWVFHGCRDQELDELYHGEWENPLQKSSDDDASSTVSQQTETEM 469
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 205 FVELAVKGEERETIVWHCYS*SSWIYSFKFSWRDDVLG 92
FVE K E +E + + S + +F F DD+LG
Sbjct: 28 FVEQLSKFEGKEGLKRKLFDSSEYFQNFSFQVNDDLLG 65
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 382 TEFVNENGNPVDVANPPVATSTTG 453
+++ EN N + N P++++TTG
Sbjct: 248 SQYATENANTNSINNSPLSSNTTG 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,899
Number of Sequences: 5004
Number of extensions: 54847
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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