Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1045
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0508 + 4027113-4028522 35 0.064
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 32 0.34
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 30 1.4
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 30 1.4
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 30 1.8
01_01_0771 - 5982826-5983327,5983424-5984772 30 1.8
12_02_0230 + 15973390-15974645,16002878-16003097 29 2.4
03_01_0151 + 1206555-1206998,1207112-1207543 29 2.4
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 28 5.5
11_01_0411 - 3114959-3115000,3115504-3116703 28 5.5
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 28 5.5
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 28 5.5
03_05_0456 - 24498212-24499581,24502660-24503071 28 5.5
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 28 7.3
10_01_0113 + 1410151-1411416 27 9.7
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 27 9.7
02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862 27 9.7
>12_01_0508 + 4027113-4028522
Length = 469
Score = 34.7 bits (76), Expect = 0.064
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 452 PVVDVATGGLA---TSTGFPFSLTNSVTVHSPLSCLY 351
PV ATGG A TSTGFPFS++ ++ V LS +Y
Sbjct: 60 PVEGAATGGRASHRTSTGFPFSVSLNLAVPPALSSIY 96
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Frame = +1
Query: 445 TTGPLQIPQQASTPIVRPDRRA-------NVRNSGPRP 537
T GP +PQ S+ +VRP R+ N+RN PRP
Sbjct: 450 TLGPQSMPQGGSSSVVRPQRQIFNNNTGNNIRNQAPRP 487
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 403 GNPVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSGPR 534
GN D PP+ ST P A+TP P+R+A+ +S R
Sbjct: 239 GNSTDAPAPPL-NSTATPRAAAAAAATPSTPPERKADTHHSHRR 281
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 415 DVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSGPRPR 540
D ++ P S + P P AS+P PDRR+ R+SG + R
Sbjct: 26 DASSDPDPDSASSPS--PSSASSPSRSPDRRSRSRSSGSKRR 65
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Frame = +1
Query: 445 TTGPLQIPQQASTPIVRPDRR-------ANVRNSGPRP 537
T GP +P S+ +VRP R+ N+RN PRP
Sbjct: 472 TLGPQSMPHGGSSSVVRPQRQFFNNNAGNNIRNQAPRP 509
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 387 FCYSPFAVILPISEAILDYIRPEINLISQF 298
FCY+ FAV +P++ Y+R E+ ++ F
Sbjct: 132 FCYTEFAVEIPVAGGSFAYLRVELGDVAAF 161
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Frame = +1
Query: 445 TTGPLQIPQQASTPIVRPDRR-------ANVRNSGPRP 537
T GP +P S+ +VRP R+ N+RN PRP
Sbjct: 24 TLGPQPMPHGGSSSVVRPQRQFFNNNAGNNIRNQAPRP 61
>03_01_0151 + 1206555-1206998,1207112-1207543
Length = 291
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 427 PPVATSTTGPLQIPQQASTPIVRPDRRANVRNSGPRPR 540
PPVA + Q A+ P+ P RA R PRPR
Sbjct: 59 PPVADLDLLESCVTQAAAPPVTAPATRAERRRKRPRPR 96
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 396 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 298
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +1
Query: 229 ALVQGHH*SKNGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNENGN 408
A + H+ + N W R+R +L L Y W + + + +Q W + +N N
Sbjct: 175 ARMAAHYNTVNDGWLIRNRQIRLDLWHVDYLWNWGLMSWVVQQQGGKMWPI-RLINSGIN 233
Query: 409 PVDVA 423
+ A
Sbjct: 234 SISEA 238
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 396 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 298
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>10_07_0061 +
12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 400 NGNPVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSGPR 534
N NP V PPVA+S + + QQ P V P +R + NS P+
Sbjct: 568 NSNPAVVGYPPVASSPSDSMHRMQQ---PSVAPSKRKS--NSVPK 607
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 408 IPIFIDEFCYSPFAVILPISEAILDYIRPEI 316
+ + FCY+ FAV +P++ Y+R E+
Sbjct: 118 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 148
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 427 PPVATSTTGPLQIPQQASTPIVRP 498
PPV++ST+ P +P P +RP
Sbjct: 2 PPVSSSTSRPASLPSSPHRPALRP 25
>10_01_0113 + 1410151-1411416
Length = 421
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 168 VSRSSPFTASSTKRWKAWNRGIGPGTSLKQKR 263
++R P A + RW W + + P T + KR
Sbjct: 181 LARGLPTPAVTPVRWDGWAQAVAPSTVMASKR 212
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -1
Query: 626 NFSSPTXXIL*GYSFQTRH*RQKFPXRFYRGLGPLFLTFARLSGLTIGVLACW 468
NF T + Q RH + R + LGP F A+ S TI + CW
Sbjct: 33 NFEKITLRVQSKSKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTIAAMLCW 85
>02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862
Length = 220
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 422 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLIT 330
A+ G + L+NS+ + + SC +P P +I+
Sbjct: 92 ASVAGLAYFLSNSLAIENYFSCFFPLPIVIS 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,335
Number of Sequences: 37544
Number of extensions: 389426
Number of successful extensions: 1224
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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