Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1045
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)                   28   5.7  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   5.7  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 28   5.7  
SB_15992| Best HMM Match : RCSD (HMM E-Value=8.5)                      28   7.5  
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)                  28   7.5  
SB_10851| Best HMM Match : Chitin_bind_1 (HMM E-Value=4.4)             27   9.9  

>SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 464 YPNKPALLSLDRTDVQTSETVVQG 535
           YPN+ + L  DR ++QT++TV++G
Sbjct: 594 YPNRDSTLYRDRYNIQTADTVIRG 617


>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 268 WTFRDRNAQLKLGDKIYFWTYVI-KDGLGYRQDNGE 372
           W   D NA  K+GD+ + +  V+ K GLG R DNGE
Sbjct: 31  WRLCDMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 64


>SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)
          Length = 325

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 382 TEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 498
           T+ +    N V V   P+      PL +P  A TP+ RP
Sbjct: 98  TDVLLFQSNSVRVLKSPLKDREPAPLPVPTMAPTPVPRP 136


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 394  NENGNPVDVANPPVATSTTGPLQIP 468
            N  GN      PPV T TT P   P
Sbjct: 6100 NNKGNKTSTTEPPVTTPTTAPTTTP 6124


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +1

Query: 334 IKDGLGYRQDNGEWTVTEFVNENGNP---VDVANPPVATSTTGPLQIPQQASTPIVRPDR 504
           + DG G     G +  T F   +  P   +    PP    T+G    P QAS PI RP R
Sbjct: 249 VGDGEGQSHVEGSFD-TNFSRIDSQPSQGIGSEQPP----TSGQTPPPSQASFPISRPQR 303

Query: 505 RA 510
           RA
Sbjct: 304 RA 305


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -1

Query: 548 RFYRGLGPLFLTFARLSGLTIGVLACWGICSGPVVDVATGGLATSTGFPF--SLTNSVTV 375
           R Y+ L   +LTF   S LTI      G+  GP V+V           P+   L  S ++
Sbjct: 686 RTYKQLNS-YLTFTPASSLTISQRRLLGVAYGPHVEVWKDPFQEKQKRPYMKHLIPSCSI 744

Query: 374 HSPLSCLY 351
           HS   C Y
Sbjct: 745 HSLQFCPY 752


>SB_15992| Best HMM Match : RCSD (HMM E-Value=8.5)
          Length = 138

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 397 ENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPD--RRANVRNSGPRP 537
           E+G+  +  NPP  T    P  I ++       PD  RR++  N G  P
Sbjct: 85  EDGDATETLNPPQTTRQQNPPTISEEVPEDAGEPDMPRRSSRANKGIAP 133


>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
          Length = 1086

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 397  ENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPD--RRANVRNSGPRP 537
            E+G+  +  NPP  T    P  I ++       PD  RR++  N G  P
Sbjct: 1033 EDGDATETLNPPQTTRQQNPPTISEEVPEDAGEPDMPRRSSRANKGIAP 1081


>SB_10851| Best HMM Match : Chitin_bind_1 (HMM E-Value=4.4)
          Length = 186

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 200 NEEMEGLESGHWSRDITKAKTAFGRSETEMLS*N 301
           N+   GL  G WS D+ KAK    +  T M+  N
Sbjct: 14  NQSDYGLSGGVWSADLEKAKQVAAKLRTGMVHLN 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,369,322
Number of Sequences: 59808
Number of extensions: 441439
Number of successful extensions: 1068
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)