Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1045
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    33   0.23 
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   2.1  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   2.1  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   2.1  
Z29094-15|CAA82341.3|  672|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    28   6.5  
Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    27   8.6  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    27   8.6  
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    27   8.6  
AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a prot...    27   8.6  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +1

Query: 343 GLGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRN 522
           G G RQ N E  +   V E  NP    N P AT  +GP+  P   + P+  P  + N  N
Sbjct: 695 GEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPMP-PLNGTAPL--PSGQQNGMN 751

Query: 523 SGP 531
             P
Sbjct: 752 VPP 754


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +1

Query: 259 NGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYR------QDNGEWTVTEFVNENGNPV 414
           NGV    D     KLGD ++F+ Y   D L ++      +D G  T T +  E G P+
Sbjct: 183 NGVPCLADETTSSKLGDVVHFYGYSDYDLLHHKLLIKAVKDGGICTETYYTEEVGGPL 240


>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 364 NGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPI 489
           N EWTV EF ++ GN  D  N  +    + P  +  + +TP+
Sbjct: 47  NWEWTVNEFWDQTGNVADNLNGTITWLRSNPAGL--KLNTPV 86


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 391  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSG-PRP 537
            VNE+G+P+DV   P+  +  G    P++++    +P +   V   G P P
Sbjct: 2289 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGTPLP 2338


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 391  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSG-PRP 537
            VNE+G+P+DV   P+  +  G    P++++    +P +   V   G P P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGTPLP 2401


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 391  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSG-PRP 537
            VNE+G+P+DV   P+  +  G    P++++    +P +   V   G P P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGTPLP 2401


>Z29094-15|CAA82341.3|  672|Caenorhabditis elegans Hypothetical
           protein C07A9.11 protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = -3

Query: 543 LSRPWTTVSDVCTSVRSNDRSAGLLGYLQWTR-GRCGHRWVGYVYWIPIFIDEFCYSPFA 367
           L++ WT    VC  V  ND +    GYL WT+   C       V  I + +    Y    
Sbjct: 46  LNKTWTQ-EQVCDYVNCNDNACEGGGYLLWTQYVECASSTFSRVILIIVGV---IYM-LV 100

Query: 366 VILPISEAILDYIRPEI-NLISQF*LSISVS 277
           + + +S A  D+  P I ++++   +S SV+
Sbjct: 101 LFIMVSSAADDFFSPSISSIVAHLRISESVA 131


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 391 VNENGNPVDVANPPVATSTTGPLQIPQQ 474
           VN N  PV  A PPV      P Q PQQ
Sbjct: 415 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 442


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 391 VNENGNPVDVANPPVATSTTGPLQIPQQ 474
           VN N  PV  A PPV      P Q PQQ
Sbjct: 401 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 428


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 391 VNENGNPVDVANPPVATSTTGPLQIPQQ 474
           VN N  PV  A PPV      P Q PQQ
Sbjct: 404 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 431


>Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical
           protein F58G11.3a protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 388 FVNENGNPVDVANPPVATSTTGPLQIPQQAST 483
           F   +G+  +  NPPVA S   PL  P  AS+
Sbjct: 191 FGKSSGSNANPTNPPVAPSIQRPLMRPSTASS 222


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 346  LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 498
            LG R   G+ ++   +N  G    V   P +T  + PL  P  +STP  RP
Sbjct: 2174 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRP 2222


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 346  LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 498
            LG R   G+ ++   +N  G    V   P +T  + PL  P  +STP  RP
Sbjct: 2247 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRP 2295


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 349 GYRQDNGEWTVTEFVNENGNPVDVANPPVATS 444
           GY Q      + EF+ + GN ++   PP+A +
Sbjct: 121 GYPQTTESKILQEFITQQGNRLETVRPPMAVT 152


>AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a protein
           protein 50, isoforma protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 334 IKDGLGYRQDNGEWTVTEFVNENGNPVDVA 423
           I+D L  R+   +W V  F+  N NP+++A
Sbjct: 239 IRDDL-LRRSTFQWCVIRFLRPNANPIEIA 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,885,722
Number of Sequences: 27780
Number of extensions: 319202
Number of successful extensions: 942
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)