Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1045
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 419 TSTGFPFSLTNSVTVHSPLSCLYP 348
           T   F FS+    T H+PLS  +P
Sbjct: 304 TPGSFNFSMAALATEHTPLSVKFP 327


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 319 FWTYVIKDGLGYRQDN 366
           F+T V+ D + YR DN
Sbjct: 248 FFTRVVTDTIKYRNDN 263


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 107 PPAKLEAIYPAGLRVTVPDDGFSLFAFHGKLNEEMEGLESGHWSRDITKA 256
           P A +  +YP  +   V D+G S   F   +  + E  E    S+ + KA
Sbjct: 156 PVALINELYPGVVYKCVSDNGESYAKFTISVTIDGETFEGTGPSKKLAKA 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,006
Number of Sequences: 438
Number of extensions: 4033
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)