BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1045 (644 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g24510.1 68417.m03514 eceriferum protein (CER2) identical to ... 33 0.16 At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ... 31 0.50 At2g40620.1 68415.m05010 bZIP transcription factor family protei... 30 1.1 At1g19680.1 68414.m02453 expressed protein 30 1.1 At5g04770.1 68418.m00492 amino acid permease family protein simi... 29 2.6 At3g58050.1 68416.m06471 expressed protein 29 2.6 At3g10600.1 68416.m01275 amino acid permease family protein simi... 29 2.6 At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein s... 29 2.6 At5g52975.1 68418.m06577 expressed protein 29 3.5 At4g21120.1 68417.m03054 amino acid permease family protein simi... 28 4.6 At2g34960.1 68415.m04290 amino acid permease family protein simi... 28 4.6 At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 28 4.6 At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 28 4.6 At5g07870.1 68418.m00906 transferase family protein similar to a... 28 6.1 At2g35050.1 68415.m04300 protein kinase family protein contains ... 28 6.1 At1g70520.1 68414.m08116 protein kinase family protein contains ... 27 8.1 >At4g24510.1 68417.m03514 eceriferum protein (CER2) identical to (CER2) [Arabidopsis thaliana] GI:1213594; contains Pfam profile PF02458: Transferase family Length = 421 Score = 33.1 bits (72), Expect = 0.16 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = -1 Query: 533 LGPLFLTFARLSGLTIGVLACWGICSGPVVDVATGGLATSTGFPFSLTNSVTVHSPLSCL 354 LGP LTF+ L L I C G+C G G + +++ F +L V+ H+P + Sbjct: 136 LGP-DLTFSPLVFLQITQFKCGGLCIGLSWAHILGDVFSASTFMKTLGQLVSGHAPTKPV 194 Query: 353 YPR-PSLITYVQ 321 YP+ P L ++ + Sbjct: 195 YPKTPELTSHAR 206 >At4g34140.1 68417.m04845 D111/G-patch domain-containing protein contains Pfam PF01585: G-patch domain Length = 418 Score = 31.5 bits (68), Expect = 0.50 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 322 WTYVIKDGLGYRQDNGEWTVTEFVNENGNP 411 W Y KDG Y+ +NGE+ E+ + NP Sbjct: 48 WYYCSKDGRYYKHENGEYVPLEYDESSVNP 77 >At2g40620.1 68415.m05010 bZIP transcription factor family protein identical to b-Zip DNA binding protein GI:2246376 from [Arabidopsis thaliana]; contains a bZIP transcription factor basic domain signature (PDOC00036) Length = 367 Score = 30.3 bits (65), Expect = 1.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 405 ESSRRSQPTCGHIYHGSTADTPTSQHSY 488 +SSR + PT + H +T++ P HSY Sbjct: 301 QSSRTNPPTAHQLMHHATSNAPAQSHSY 328 >At1g19680.1 68414.m02453 expressed protein Length = 444 Score = 30.3 bits (65), Expect = 1.1 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +3 Query: 432 CGHIYHGSTADTPTSQ-HSYR*TGQTCKRQK--QWSKAAIKSVRELLSSVTSLKR 587 CGH+YH + +T T++ Y T C + + S+ A+K+ EL TS KR Sbjct: 299 CGHVYHAACLETMTNETEKYDPTCPICTETQVTKLSRKALKAEAEL--KATSYKR 351 >At5g04770.1 68418.m00492 amino acid permease family protein similar to cationic amino acid transporter-1 [Rattus norvegicus] GI:1589917; contains Pfam profile PF00324: Amino acid permease Length = 583 Score = 29.1 bits (62), Expect = 2.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 396 IDEFCYSPFAVILPISEAILDYIR 325 + FCY+ FAV LP++ YIR Sbjct: 108 LSAFCYTEFAVHLPVAGGAFSYIR 131 >At3g58050.1 68416.m06471 expressed protein Length = 1209 Score = 29.1 bits (62), Expect = 2.6 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 92 AQYIVPPAKLEAIYPAGLRVTVPDDGFSLFAFHG 193 AQ + PP +L + P + TV +D FSLF F G Sbjct: 1123 AQNLEPPLELNCLAPPETQ-TVNEDSFSLFHFSG 1155 >At3g10600.1 68416.m01275 amino acid permease family protein similar to SP|Q09143 High-affinity cationic amino acid transporter-1 (CAT-1) {Mus musculus}; contains Pfam profile PF00324: Amino acid permease Length = 584 Score = 29.1 bits (62), Expect = 2.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 396 IDEFCYSPFAVILPISEAILDYIR 325 + FCY+ FAV LP++ YIR Sbjct: 107 LSAFCYTEFAVHLPVAGGAFSYIR 130 >At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein similar to basic endochitinase CHB4 precursor SP:Q06209 from [Brassica napus] Length = 273 Score = 29.1 bits (62), Expect = 2.6 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 173 SLFAFHGKLNEEMEGLESGHWSRDITKAK 259 +L+ G++ + ++G E G+W RD TK K Sbjct: 224 ALYLGFGEITKRVDGRECGNWRRDDTKNK 252 >At5g52975.1 68418.m06577 expressed protein Length = 121 Score = 28.7 bits (61), Expect = 3.5 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = +2 Query: 41 IIILSVLVTICSAQPRAAQYIVPPAKLEAIYPAGLRVTVPDDGFSLFAFHGKLNEEMEGL 220 I+I+S+ V I Q A PP + I+P GL + + SLF G + E + + Sbjct: 10 ILIVSLCVAIFVTQG-VAHMQTPPTTVPGIFPPGLPIDLVKCWSSLFNVEGCVLEIAKSI 68 Query: 221 ESG 229 SG Sbjct: 69 FSG 71 >At4g21120.1 68417.m03054 amino acid permease family protein similar to cationic amino acid transporter-1 [Rattus norvegicus] GI:1589917; contains Pfam profile PF00324: Amino acid permease Length = 594 Score = 28.3 bits (60), Expect = 4.6 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -3 Query: 408 IPIFIDEFCYSPFAVILPISEAILDYIRPEI 316 + + FCY+ FAV +P++ Y+R E+ Sbjct: 117 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 147 >At2g34960.1 68415.m04290 amino acid permease family protein similar to cationic amino acid transporter 3 [Rattus norvegicus] GI:2116552; contains Pfam profile PF00324: Amino acid permease Length = 569 Score = 28.3 bits (60), Expect = 4.6 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -3 Query: 387 FCYSPFAVILPISEAILDYIRPEINLISQF 298 FCY+ FAV +P++ Y+R E+ + F Sbjct: 118 FCYTEFAVEIPVAGGSFAYLRIELGDFAAF 147 >At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to gi|10880495|gb|AAG24277 Length = 176 Score = 28.3 bits (60), Expect = 4.6 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 409 PVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSGP 531 P VA PP A + P Q+P A P +PD + +S P Sbjct: 105 PPPVATPPPAPLASPPAQVP--APAPTTKPDSPSPSPSSSP 143 >At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to gi|10880495|gb|AAG24277 Length = 191 Score = 28.3 bits (60), Expect = 4.6 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 409 PVDVANPPVATSTTGPLQIPQQASTPIVRPDRRANVRNSGP 531 P VA PP A + P Q+P A P +PD + +S P Sbjct: 105 PPPVATPPPAPLASPPAQVP--APAPTTKPDSPSPSPSSSP 143 >At5g07870.1 68418.m00906 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus [gi:2239091]; contains Pfam transferase family domain PF002458 Length = 464 Score = 27.9 bits (59), Expect = 6.1 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 301 LGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNENGNPV-DVANPPVATSTTGPL 459 LGD FW + + L ++ E T+ N N N + + NPP+ TGP+ Sbjct: 178 LGDGSSFWQFF--NSLSEIFNSQEETIGNNNNNNNNALLCLKNPPIIREATGPM 229 >At2g35050.1 68415.m04300 protein kinase family protein contains Pfam profile: PF00069 Eukaryotic protein kinase domain Length = 1257 Score = 27.9 bits (59), Expect = 6.1 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +1 Query: 382 TEFVNENGNPVDVANPPVATSTTGPLQI-PQQASTPIVRPD 501 T N NG P+D + PP+ + QI PQ ++PD Sbjct: 874 TSMTNTNGVPIDYSYPPLQSEKVASSQIHPQIHFDGNIKPD 914 >At1g70520.1 68414.m08116 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain Length = 649 Score = 27.5 bits (58), Expect = 8.1 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -3 Query: 546 ILSRPWTTVS-DVCTSVRSNDRSAGLLGYLQWTRGRCGH 433 +L+ W T+S D C N ++ + G L W+ GR H Sbjct: 195 VLANCWRTLSPDSCKQCLENASASVVKGCLPWSEGRALH 233 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,186,174 Number of Sequences: 28952 Number of extensions: 302128 Number of successful extensions: 1063 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1029 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1063 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1334473344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -