Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1044X
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1; ...    33   2.7  
UniRef50_Q7V4N0 Cluster: Putative uncharacterized protein precur...    33   4.8  
UniRef50_Q8II50 Cluster: Putative uncharacterized protein; n=1; ...    32   6.3  
UniRef50_Q1KVT3 Cluster: DNA-directed RNA polymerase; n=1; Scene...    32   8.3  

>UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 894

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +1

Query: 289 KKKTKSLLFSIFHIIAHMIIWKEKNIYIF--VSFHFF*SSLKSQ-RFYRSFTSIYTFYTQ 459
           KKK  +L+   +  I +  I KE  IYIF  ++   F S  KS   FY +   IY    +
Sbjct: 12  KKKNFNLILKSYKEIVNNKIIKEGKIYIFNNLNIPIFVSPDKSNYLFYINKKYIYFKENK 71

Query: 460 KFHFYPPKF 486
            F+FY PKF
Sbjct: 72  YFYFYFPKF 80


>UniRef50_Q7V4N0 Cluster: Putative uncharacterized protein
           precursor; n=1; Prochlorococcus marinus str. MIT
           9313|Rep: Putative uncharacterized protein precursor -
           Prochlorococcus marinus (strain MIT 9313)
          Length = 600

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = -3

Query: 366 YIFFFPNYHVGYNMKDAEKKRFRFFFVLRHGVISTYT--KYFGVIIKK-VPRPL 214
           Y+ + P+ +VG +  DAE K  RF   LR  ++S YT  + F ++ KK  P P+
Sbjct: 339 YLSYLPSLYVGGDRYDAELKFVRFVPDLRLFILSIYTAIRSFQILKKKETPNPV 392


>UniRef50_Q8II50 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1701

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 313  FSIFHIIAHMIIWKEKNIYIFVSFHFF*SSLKSQRFYRSFTSIYTFYTQKFHFY 474
            FS  HI     +WK    +I V+ HF  + L++   Y +F  +   YT K+ +Y
Sbjct: 1324 FSKLHICLFKNVWKFLICHIQVN-HFIKNILENDIRYNTFEKLIDIYTHKYFYY 1376


>UniRef50_Q1KVT3 Cluster: DNA-directed RNA polymerase; n=1;
           Scenedesmus obliquus|Rep: DNA-directed RNA polymerase -
           Scenedesmus obliquus
          Length = 1529

 Score = 31.9 bits (69), Expect = 8.3
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 365 YIFSFHFISFDRV*NHNDSIEVSLQYILFTHKSFIFTLQNF 487
           + F FHF+   +  N N S  VSL+++  + K  IF  QNF
Sbjct: 688 FSFFFHFLKIFKFSNFNMSNSVSLEFLNDSEKENIFYSQNF 728


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,181,445
Number of Sequences: 1657284
Number of extensions: 9819007
Number of successful extensions: 21569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21528
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)