Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1044X
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    28   0.69 
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.8  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.4  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    25   8.4  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   8.4  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2   TALTVVVKRLKDLQMFELF*YWKCSCNAFIT--CFGVV 109
           T L  +V +LKD ++ +L  YW    N FI   C+ ++
Sbjct: 536 TELNAIVSQLKDERILKLQTYWSIGINLFILIGCYVII 573


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 223 GNFFNYYPKIFCVS*YYPMAKNKKKTK 303
           GNFF  +  I CV  Y+ +  N   T+
Sbjct: 263 GNFFPLFLSILCVGYYHHLLNNPSNTE 289


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 201 VCNKPAVGELF*LLPQNILCKLILPHGEEQKKNEIASFQHLSYYSPH 341
           +CN P+      L P     K  + + E +  NEI +++H   YSP+
Sbjct: 100 ICNSPSKNHETSLSPS----KSTIDNNERKLDNEIDNYKHDVKYSPY 142


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 295 KTKSLLFSIFHIIAHMIIWKEKNIYIFVSFHFF*SSLKSQRFYRSFTSIYTFYTQ-KFH 468
           K  ++LF +  +I    + + + + +    +   +  +S RFY +F ++   Y Q KF+
Sbjct: 16  KLSTVLFFLCAVITFQGVIQRREVELDTPVYVHYAKYRSARFYHAFRNVRQQYAQVKFN 74


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 226 NFFNYYPKIFCVS*YYPMAKNKKKTKSLLFSI 321
           +F + +  +F +S YY +AKN K    +L  +
Sbjct: 237 SFTSIFYSVFMLSIYYAIAKNGKVNLDMLIDV 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,046
Number of Sequences: 5004
Number of extensions: 48090
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)