Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1044X
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    29   2.8  
05_07_0052 + 27340499-27340597,27340708-27340801,27341206-273414...    27   8.5  
01_06_0290 + 28235024-28235037,28235160-28235643                       27   8.5  

>03_05_0440 +
           24322332-24322388,24323478-24323615,24323654-24323736,
           24325038-24325128,24326091-24326189,24326356-24326418,
           24327182-24327259,24329354-24329543,24329812-24330065,
           24330159-24330531,24331193-24331276,24332085-24332371,
           24332495-24332542,24333194-24333220,24333951-24333987,
           24334063-24334250,24334343-24334521,24334595-24334877,
           24335481-24335717,24335798-24335988,24336552-24336561,
           24336844-24336984,24337073-24337288,24338437-24338727,
           24338852-24339025
          Length = 1272

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 146 PLHPVSTFISIQLRLQNML*KHYNYISSIK 57
           PLHP+  F    LR QN++ K+YN  S  K
Sbjct: 859 PLHPLENFPE-SLRRQNIVNKYYNSFSEAK 887


>05_07_0052 +
           27340499-27340597,27340708-27340801,27341206-27341415,
           27341727-27342439
          Length = 371

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 115 ILINVLTGCKGDALQARTLSHKE*CSYAKYAISQRSGNFFN 237
           IL   L GC G  + A    HK  CS AK  +   S + FN
Sbjct: 89  ILQGFLLGCHGSTVGAGPTLHKSICSSAKNVVDS-SFSLFN 128


>01_06_0290 + 28235024-28235037,28235160-28235643
          Length = 165

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 268 YYPMAKNKKKTK-SLLFSIFHIIAHMIIWKEKNIYIF 375
           ++ +A+ + +T+ S  F  F ++   ++WKE+N  +F
Sbjct: 98  WWQLARTRFQTRYSKAFDTFFMLVCWLVWKERNARVF 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,355,319
Number of Sequences: 37544
Number of extensions: 233202
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)