BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1044X (500 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00049-2|AAC47052.2| 327|Caenorhabditis elegans Serpentine rece... 31 0.62 AF038608-14|AAT92087.1| 314|Caenorhabditis elegans Serpentine r... 28 4.4 AF125952-2|AAD14700.1| 478|Caenorhabditis elegans Hypothetical ... 27 7.6 AC024828-2|AAU87812.1| 462|Caenorhabditis elegans Hypothetical ... 27 7.6 AC006722-8|AAK68418.2| 478|Caenorhabditis elegans Hypothetical ... 27 7.6 >U00049-2|AAC47052.2| 327|Caenorhabditis elegans Serpentine receptor, class g (gamma)protein 2 protein. Length = 327 Score = 30.7 bits (66), Expect = 0.62 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +1 Query: 256 CVS*YYPMAKNKKKTKSLLF----SIFHI-IAHMIIWKEKNIYIFVSFH 387 C S Y P+A+N K ++ ++ H I ++++WK +N+Y+ SF+ Sbjct: 21 CDSSYSPLAENLKYLVQFVYLLPAAMLHARILYILLWKHRNLYLKQSFY 69 >AF038608-14|AAT92087.1| 314|Caenorhabditis elegans Serpentine receptor, class z protein83 protein. Length = 314 Score = 27.9 bits (59), Expect = 4.4 Identities = 17/80 (21%), Positives = 35/80 (43%) Frame = +1 Query: 169 LSHKE*CSYAKYAISQRSGNFFNYYPKIFCVS*YYPMAKNKKKTKSLLFSIFHIIAHMII 348 LS+ + AK+ + Y ++F Y P+ ++ +K + ++I+ I Sbjct: 167 LSNGSTAAEAKFDTFSSATIIIPYVLQLFSTLFYIPIMRSVRKNAYVTSGHYYILQKYIF 226 Query: 349 WKEKNIYIFVSFHFF*SSLK 408 W+ IF SF S+++ Sbjct: 227 WQAVTALIFESFPIIFSTIQ 246 >AF125952-2|AAD14700.1| 478|Caenorhabditis elegans Hypothetical protein C01B4.8 protein. Length = 478 Score = 27.1 bits (57), Expect = 7.6 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 358 FLSKLSCGL*YERC*KEAISFFFCSSPWGNINLHKIF 248 FL+ LSC + IS F C S WG +++ +F Sbjct: 176 FLAVLSCAFQWSNVICMPISGFLCESSWGWRSIYYLF 212 >AC024828-2|AAU87812.1| 462|Caenorhabditis elegans Hypothetical protein Y55F3BL.2 protein. Length = 462 Score = 27.1 bits (57), Expect = 7.6 Identities = 16/64 (25%), Positives = 32/64 (50%) Frame = +1 Query: 229 FFNYYPKIFCVS*YYPMAKNKKKTKSLLFSIFHIIAHMIIWKEKNIYIFVSFHFF*SSLK 408 FF + K S +P +KKK ++++F ++ + K+ + F FF S+L Sbjct: 21 FFQFSAKYLEFSVNFPRKNSKKKLETIIFYEKNVEKTLFFTKQYFKFFNEKFQFF-SNLS 79 Query: 409 SQRF 420 +++F Sbjct: 80 NKKF 83 >AC006722-8|AAK68418.2| 478|Caenorhabditis elegans Hypothetical protein Y19D10A.5 protein. Length = 478 Score = 27.1 bits (57), Expect = 7.6 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 358 FLSKLSCGL*YERC*KEAISFFFCSSPWGNINLHKIF 248 FL+ LSC + IS F C S WG +++ +F Sbjct: 176 FLAVLSCAFQWSNVICMPISGFLCESSWGWRSIYYLF 212 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,955,704 Number of Sequences: 27780 Number of extensions: 258168 Number of successful extensions: 585 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 585 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 956602620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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