Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1044X
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    31   0.62 
AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine r...    28   4.4  
AF125952-2|AAD14700.1|  478|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC006722-8|AAK68418.2|  478|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +1

Query: 256 CVS*YYPMAKNKKKTKSLLF----SIFHI-IAHMIIWKEKNIYIFVSFH 387
           C S Y P+A+N K     ++    ++ H  I ++++WK +N+Y+  SF+
Sbjct: 21  CDSSYSPLAENLKYLVQFVYLLPAAMLHARILYILLWKHRNLYLKQSFY 69


>AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine
           receptor, class z protein83 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = +1

Query: 169 LSHKE*CSYAKYAISQRSGNFFNYYPKIFCVS*YYPMAKNKKKTKSLLFSIFHIIAHMII 348
           LS+    + AK+     +     Y  ++F    Y P+ ++ +K   +    ++I+   I 
Sbjct: 167 LSNGSTAAEAKFDTFSSATIIIPYVLQLFSTLFYIPIMRSVRKNAYVTSGHYYILQKYIF 226

Query: 349 WKEKNIYIFVSFHFF*SSLK 408
           W+     IF SF    S+++
Sbjct: 227 WQAVTALIFESFPIIFSTIQ 246


>AF125952-2|AAD14700.1|  478|Caenorhabditis elegans Hypothetical
           protein C01B4.8 protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 358 FLSKLSCGL*YERC*KEAISFFFCSSPWGNINLHKIF 248
           FL+ LSC   +       IS F C S WG  +++ +F
Sbjct: 176 FLAVLSCAFQWSNVICMPISGFLCESSWGWRSIYYLF 212


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +1

Query: 229 FFNYYPKIFCVS*YYPMAKNKKKTKSLLFSIFHIIAHMIIWKEKNIYIFVSFHFF*SSLK 408
           FF +  K    S  +P   +KKK ++++F   ++   +   K+   +    F FF S+L 
Sbjct: 21  FFQFSAKYLEFSVNFPRKNSKKKLETIIFYEKNVEKTLFFTKQYFKFFNEKFQFF-SNLS 79

Query: 409 SQRF 420
           +++F
Sbjct: 80  NKKF 83


>AC006722-8|AAK68418.2|  478|Caenorhabditis elegans Hypothetical
           protein Y19D10A.5 protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 358 FLSKLSCGL*YERC*KEAISFFFCSSPWGNINLHKIF 248
           FL+ LSC   +       IS F C S WG  +++ +F
Sbjct: 176 FLAVLSCAFQWSNVICMPISGFLCESSWGWRSIYYLF 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,955,704
Number of Sequences: 27780
Number of extensions: 258168
Number of successful extensions: 585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)