Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1044X
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20940.1 68416.m02647 cytochrome P450 family protein similar ...    27   5.4  
At2g36080.1 68415.m04430 DNA-binding protein, putative strong si...    27   9.4  

>At3g20940.1 68416.m02647 cytochrome P450 family protein similar to
           Cytochrome P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]; similar to cytochrome P450 (SP:H71417)
           [Arabidopsis thaliana]
          Length = 523

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 219 VGELF*LLPQNILCKLILPHGEEQKKNEIASFQHL 323
           +GE    L  NI+CK+I+     ++  E   F+HL
Sbjct: 182 IGEEAAKLNNNIICKMIMGRSCSEENGEAEKFRHL 216


>At2g36080.1 68415.m04430 DNA-binding protein, putative strong
           similarity to DNA-binding proteins from [Arabidopsis
           thaliana] RAV1 GI:3868857, RAV2 GI:3868859; contains
           Pfam profile PF02362: B3 DNA binding domain
          Length = 244

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 433 TSIYTFYTQKFHFYPPKFHFTP 498
           ++ YT    +FHFYP + H+ P
Sbjct: 207 SNTYTTNHDQFHFYPQQQHYPP 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,840,651
Number of Sequences: 28952
Number of extensions: 221848
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)