Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1043X
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0611 + 24347384-24350015,24350126-24350497,24350561-243508...    27   6.5  
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726...    27   8.7  

>02_04_0611 + 24347384-24350015,24350126-24350497,24350561-24350805,
            24350997-24351059,24351919-24352422
          Length = 1271

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 249  TSISSHNVK*MPIIF-VISIYYVNFSVLGSVFYYL 350
            +S+  H    +P++  V+ +YY+ F+ LG+VFY L
Sbjct: 1029 SSVQQHGC--VPVVDGVLLVYYLGFANLGNVFYSL 1061


>01_05_0344 +
           21172101-21172233,21172332-21172402,21172492-21172653,
           21172995-21173100,21174242-21174439,21174565-21174631,
           21174868-21175051,21175145-21175324,21175408-21175587,
           21176472-21176627,21177487-21178067,21178535-21178640,
           21179152-21179331,21179620-21179892
          Length = 858

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 111 LYKIILIISYKSEITFKYFKCSRRMSVNHGFKTC 10
           LYK I+I+      TF   KC+       G+ TC
Sbjct: 220 LYKAIIIVKQSGNDTFSLIKCNFSGMRYAGYSTC 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,077,727
Number of Sequences: 37544
Number of extensions: 179173
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)