Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1043X
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.7  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 133 HNNNLSQLV*NNFNHLLQK*NHI 65
           +NNN  +L  NN+  L    N+I
Sbjct: 92  NNNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 133 HNNNLSQLV*NNFNHLLQK*NHI 65
           +NNN  +L  NN+  L    N+I
Sbjct: 92  NNNNYKKLYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 133 HNNNLSQLV*NNFNHLLQK*NHI 65
           +NNN  +L  NN+  L    N+I
Sbjct: 92  NNNNYKKLYCNNYRKLYYNINYI 114


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 305 YRNYKNNWHLFN 270
           Y NY NN++ +N
Sbjct: 94  YNNYNNNYNNYN 105


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 305 YRNYKNNWHLFN 270
           Y NY NN++ +N
Sbjct: 327 YNNYNNNYNNYN 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,864
Number of Sequences: 438
Number of extensions: 2775
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)