Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1043X
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15096.1 68417.m02320 hypothetical protein                          27   5.5  
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa...    27   9.6  

>At4g15096.1 68417.m02320 hypothetical protein
          Length = 679

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 465 MIFLLSVYNFFVLMKNYVRQLLMTLNHRAHLGKFFVLN 352
           M+F L     F L +++ RQLL+ L H A L K F+L+
Sbjct: 536 MMFNLKKKGRFRLFQSFSRQLLLWLRHDALLIKPFLLS 573


>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles:PF05495 CHY zinc
           finger, PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 291

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   CPTCFESMIDRHSSRALEVFKCDFT 78
           CP CFE + D  S+R + V +C  T
Sbjct: 163 CPVCFEYLFD--STRDITVLRCGHT 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,676,359
Number of Sequences: 28952
Number of extensions: 165856
Number of successful extensions: 259
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)