Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1042
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   2.3  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   7.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   9.4  

>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 252 FNVLNMPTTNWICS 211
           FN LN+P T WIC+
Sbjct: 90  FNTLNVPITLWICA 103


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 526 IYVPQINNEHQKYLIASLSTKKKSLNNFLIYSFIYIQKKRYYIFRFMV*NIILSNTYNIL 347
           +++P + N  +  +  S   +K+++   LIYS  Y     Y  +RF      +  TY ++
Sbjct: 656 LFMPNLVNWRKVCVPKSEMEEKEAIMEKLIYSHQYADSLSYVDYRFSS-QPTIYETYELM 714

Query: 346 N 344
           N
Sbjct: 715 N 715


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -1

Query: 535 THPIYVPQINNEHQKYLIASLSTKKKSLNNFLIYSFIYIQKKRYYIFRFMV*NIILSNTY 356
           +HP+    +   H    +A++    K +NN    +FI  +   YY+F     N  LSN+ 
Sbjct: 201 SHPVGCLIVITSHNTNPMATVMRLFKEINNAPFPNFISKEILHYYLFIHDEDNNDLSNSK 260

Query: 355 NI 350
            I
Sbjct: 261 QI 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,768
Number of Sequences: 5004
Number of extensions: 25597
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)