Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1042
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 29   1.8  
SB_50520| Best HMM Match : zf-DNL (HMM E-Value=3.4)                    28   4.2  

>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -1

Query: 535 THPIYVPQINNEHQKYLIASLSTKKKSLNNFLIYS 431
           T+P+ V ++N + +KYL   +S +KK + + LI S
Sbjct: 7   TNPVSVNRMNEDIKKYLDKEMSDEKKMIQDLLIGS 41


>SB_50520| Best HMM Match : zf-DNL (HMM E-Value=3.4)
          Length = 277

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = -1

Query: 499 HQKYLIASLSTKKKSLNN--FLIYSFIYIQKKRYYIFRFMV*NIILSNTYNILNIFFSC- 329
           H +  +  +S ++  L+   F I + I++Q   + + R ++  II  N Y+ +++FF+C 
Sbjct: 164 HARGEVKEISRREMLLHGDIFGILTGIFMQDGPFLVLRLVL--IIKYNLYSEMHLFFTCK 221

Query: 328 NVIAIHVI 305
           N IA+ ++
Sbjct: 222 NAIALSLL 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,145
Number of Sequences: 59808
Number of extensions: 164179
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)