Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1041
         (286 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9AW08 Cluster: Putative uncharacterized protein; n=1; ...    34   0.70 
UniRef50_Q18LF7 Cluster: Helicase/primase complex; n=1; Elephant...    31   6.5  
UniRef50_Q73NU9 Cluster: Lipoprotein, putative; n=1; Treponema d...    31   6.5  
UniRef50_Q1QFL2 Cluster: Putative uncharacterized protein precur...    31   6.5  
UniRef50_Q9VSG2 Cluster: CG7213-PA; n=2; Drosophila melanogaster...    31   6.5  
UniRef50_A5KKF6 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  

>UniRef50_Q9AW08 Cluster: Putative uncharacterized protein; n=1;
           Guillardia theta|Rep: Putative uncharacterized protein -
           Guillardia theta (Cryptomonas phi)
          Length = 729

 Score = 33.9 bits (74), Expect = 0.70
 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
 Frame = -2

Query: 219 FIFDAIYLVANSRKNNKCV*RMSKVLPLHTLAQKATSNNDSSR*KRPHKDNRL----*FI 52
           F++++ +L   S  NN  + R+SKV+ L+ L +KAT+NN ++  K   + N+      FI
Sbjct: 268 FLYNSFFLNFFSNINNYQL-RISKVIKLNNLIKKATANNYTNSQKLYFRQNKKIFNENFI 326

Query: 51  LIFYQRYD*QRVSXL 7
             F+Q Y+ ++ + L
Sbjct: 327 YSFFQLYNEEKNNIL 341


>UniRef50_Q18LF7 Cluster: Helicase/primase complex; n=1; Elephantid
           herpesvirus 1|Rep: Helicase/primase complex - Elephantid
           herpesvirus 1
          Length = 975

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 185 LEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENV 81
           L  +T     C  Y +Y+H +  RLP M+++DEN+
Sbjct: 728 LVNVTVVDKNCFDYGIYSHGKSVRLPMMSKVDENL 762


>UniRef50_Q73NU9 Cluster: Lipoprotein, putative; n=1; Treponema
           denticola|Rep: Lipoprotein, putative - Treponema
           denticola
          Length = 598

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 18/74 (24%), Positives = 39/74 (52%)
 Frame = +2

Query: 65  LLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK*IASNMKVYALIVAC 244
           +LSL G+  L E  L+    A + KGS   +++   + F +  +K + +  K+Y  I+A 
Sbjct: 61  ILSLPGKNELAEKKLDSTLAALIEKGSPVSLKEA--VLFIQNDSKGLTNENKLYLKIIAD 118

Query: 245 LALVCWSRKTHAIR 286
           +  + +  +T+ ++
Sbjct: 119 IMYLAYPLETNGVK 132


>UniRef50_Q1QFL2 Cluster: Putative uncharacterized protein
           precursor; n=1; Nitrobacter hamburgensis X14|Rep:
           Putative uncharacterized protein precursor - Nitrobacter
           hamburgensis (strain X14 / DSM 10229)
          Length = 334

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -1

Query: 286 SDSMSLPRPAHQSQTGNDESIHLHI*CDLFSGEFSKK*QVRLTYVESTAFTHTGAEG 116
           +D +SLP  +   +TG+D SI        FSGEFSK+          + +TH GA G
Sbjct: 46  NDELSLPTVS-AFKTGDDPSIKQRD----FSGEFSKRITEAFAVSFGSTYTHLGAPG 97


>UniRef50_Q9VSG2 Cluster: CG7213-PA; n=2; Drosophila
           melanogaster|Rep: CG7213-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 449

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 53  INYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLF 178
           +N   L+L  +  L  ++ +V   +SVC G T+DI+ + L F
Sbjct: 114 VNVKCLNLLLQSELQRAISKVKTASSVCSGRTYDIKYSVLTF 155


>UniRef50_A5KKF6 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus torques ATCC 27756|Rep: Putative
           uncharacterized protein - Ruminococcus torques ATCC
           27756
          Length = 281

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 71  SLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHL 172
           ++CGR  LD+  LE  FC S C G+ ++  Q HL
Sbjct: 243 AVCGRTELDDPCLEFRFC-SKCNGN-YEYCQDHL 274


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,530,574
Number of Sequences: 1657284
Number of extensions: 4497710
Number of successful extensions: 9402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9401
length of database: 575,637,011
effective HSP length: 72
effective length of database: 456,312,563
effective search space used: 10038876386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)