Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1041
         (286 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   0.48 
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   0.48 
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   1.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   2.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   2.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.4  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 0.48
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 161 DVCRKYCLYTHWRRRRLPTMTRLDENVR 78
           ++CRK C  T + +  + T+ R DE  +
Sbjct: 83  NLCRKNCFTTDYFKGCIDTLQRSDEEAQ 110


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 23.4 bits (48), Expect = 0.48
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 161 DVCRKYCLYTHWRRRRLPTMTRLDENVR 78
           ++CRK C  T + +  + T+ R DE  +
Sbjct: 83  NLCRKNCFTTDYFKGCIDTLQRSDEEAQ 110


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 182 EKITSAFDVCRKYCLYTH 129
           + I    DVC+KY L+ H
Sbjct: 301 DPIEKIADVCQKYKLWLH 318


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 107 LEVAFCASVCKGSTFDIRQTHLLFFREFATK 199
           LE+    +VC+ +  + ++T  L +R   TK
Sbjct: 291 LEILITVTVCELTILEYKRTKKLLYRIPVTK 321


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 107 LEVAFCASVCKGSTFDIRQTHLLFFREFATK 199
           LE+    +VC+ +  + ++T  L +R   TK
Sbjct: 116 LEILITVTVCELTILEYKRTKKLLYRIPVTK 146


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 47  IKINYNLLSLCGRFH 91
           +K N NL + CGR H
Sbjct: 752 MKKNRNLGAACGRIH 766


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 47  IKINYNLLSLCGRFH 91
           +K N NL + CGR H
Sbjct: 752 MKKNRNLGAACGRIH 766


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 47  IKINYNLLSLCGRFH 91
           +K N NL + CGR H
Sbjct: 752 MKKNRNLGAACGRIH 766


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 47  IKINYNLLSLCGRFH 91
           +K N NL + CGR H
Sbjct: 752 MKKNRNLGAACGRIH 766


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,705
Number of Sequences: 336
Number of extensions: 1198
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4897022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)