Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1041
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   0.52 
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   1.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   2.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   2.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   2.8  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    24   3.7  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    24   3.7  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    24   4.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   6.5  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    23   8.5  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 0.52
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 138 KAVLSTYVKRTCYFFENS 191
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +2

Query: 56  NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK 199
           NYN+   C   H D   L +A CA  CK     +   H     EF TK
Sbjct: 16  NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTK 61


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 193 H*INRIKYEGVCSHRCL 243
           H I+R++ +GVC  RCL
Sbjct: 446 HAISRVEAQGVCVDRCL 462


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 193 GEFSKK*QVRLTYVESTAFTHTGAEGD 113
           GE  +    R+ YV   AFTH G   D
Sbjct: 729 GEIYQHENCRIAYVAQAAFTHLGHHPD 755


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -2

Query: 216  IFDAIYLVANSRKNNKCV*RMSKVLPLHTLAQKATSNNDSSR*KRPHKDNRL 61
            + D +YL  +S ++      + +VLP+    +K  SN+ S +      DN +
Sbjct: 901  VVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKLVSNSQSEKIGDLSNDNSM 952


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 203 IASNMKVYALIVACLALVCWSRKTHAI 283
           +A  M+V +LI ACLA VC SR    +
Sbjct: 468 VAKAMRVGSLI-ACLAYVCDSRDADCV 493


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 80  GRFHLDESLLEVAF 121
           G +H+DE LLEV F
Sbjct: 191 GSYHVDEKLLEVEF 204


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 102 HCWKSPSAPVCVKAVLSTYVKRTCYFFENS 191
           HC   P A  C  A +S+Y+     F+ N+
Sbjct: 236 HCSGHPLAAFCGLATISSYLVLFIVFYHNT 265


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 174 YFFENSPLNKSHQI*RCMLSSLPVWLW 254
           YF  N P  K HQI R +   L  +++
Sbjct: 23  YFDANLPFKKRHQIVRSIYHGLKYYIY 49


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 81  DVFI*TSHCWKSPSAPVCVKAVL 149
           D+F  +   WK+PSA V  KA+L
Sbjct: 184 DLFNLSVRTWKNPSASVHDKALL 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,018
Number of Sequences: 5004
Number of extensions: 20053
Number of successful extensions: 52
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)