Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1041
(286 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 29 0.76
05_04_0069 - 17639386-17641380 27 2.3
11_05_0070 + 18818127-18818404,18818492-18818532,18818691-188189... 27 3.1
11_06_0635 + 25704214-25704360,25705198-25705656 26 4.1
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072... 26 4.1
07_03_0905 + 22459687-22460071,22461766-22461888,22461986-224620... 26 4.1
11_04_0095 + 13429895-13431019 26 5.4
01_03_0196 - 13696056-13697448,13697676-13697713 26 5.4
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481... 25 7.1
08_02_0646 + 19676133-19677581 25 7.1
12_02_0587 + 20835741-20836115,20836183-20836218,20836409-208366... 25 9.4
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 25 9.4
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357... 25 9.4
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 25 9.4
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 171 CYFFENSPLNKSHQI*RCMLS-SLPVWLWC 257
CY E + L++ HQI C ++ S V +WC
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWC 100
>05_04_0069 - 17639386-17641380
Length = 664
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 95 DESLLEVAFCASVCKGSTFDIRQTHLL-FFREFATK*IASNMKVYALIVAC 244
+ S ++VA C ++ G + + + + L FREF + I N+ + IVAC
Sbjct: 216 ESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVAC 266
>11_05_0070 +
18818127-18818404,18818492-18818532,18818691-18818990,
18820005-18820757,18820840-18820889
Length = 473
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 205 RIKYEGVCSHRCLSGSGVLVEEDSCY 282
R+ +E C H GSGVL+E + Y
Sbjct: 85 RMIFEKTCGHSERDGSGVLLEPEDTY 110
>11_06_0635 + 25704214-25704360,25705198-25705656
Length = 201
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 80 GRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFA 193
G FH D SLL+ AF A + + FFR+FA
Sbjct: 139 GLFHSDSSLLDDAFTAGYVRRQATGMYAAE--FFRDFA 174
>07_03_1362 -
26006159-26006461,26006691-26006841,26006975-26007212,
26007293-26007503,26007631-26007755,26007895-26008023,
26008540-26009326
Length = 647
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 128 WRRRRLPTMTRLDEN 84
WR++RLPT T L EN
Sbjct: 293 WRKKRLPTKTPLIEN 307
>07_03_0905 +
22459687-22460071,22461766-22461888,22461986-22462086,
22462229-22462301,22462771-22462848,22462995-22463065,
22463539-22463841,22464180-22464302,22464539-22464736
Length = 484
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 187 IRH*INRIKYEGVCSHRCLSGSGVLVE 267
I H ++ KY+G+ C+SG GVLVE
Sbjct: 180 IAHSLDLRKYDGIV---CVSGDGVLVE 203
>11_04_0095 + 13429895-13431019
Length = 374
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 158 VCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDC 60
V + CL +R+L +TRLD++ R TT C
Sbjct: 329 VLKAACLDFLSCKRKLRQVTRLDDDFRLLTTTC 361
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 86 FHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK*IASNMKVYALIVACLALVCWS 265
FHL+E L FC +C +T + L+ + IA ++ + + +V V
Sbjct: 359 FHLEELLKLFRFCRKICLSATLVLA---LMSIGGWVRNLIAGSIAIVSALVGFALFVTMG 415
Query: 266 RK 271
RK
Sbjct: 416 RK 417
>12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,
4816803-4816830,4817136-4817339,4817352-4819136,
4820358-4821139
Length = 1241
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 120 SAPVCVKAVLSTYVKRTCYFFENSPLNKSHQ 212
SAP + ++ TY KRT + N P +K ++
Sbjct: 1057 SAPFDINEMVETYNKRTGFKLGNEPQDKLYE 1087
>08_02_0646 + 19676133-19677581
Length = 482
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 173 LFFREFATK*IASNMKVYALIVACLALVC 259
+F R A + +N +VYA+ AC +VC
Sbjct: 427 VFHRAAAGEAPRANWRVYAVYAACFVVVC 455
>12_02_0587 +
20835741-20836115,20836183-20836218,20836409-20836617,
20837402-20837498,20837977-20838046,20838224-20838281,
20838914-20839734,20839780-20840121,20840224-20841227
Length = 1003
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 173 TSAFDVCRKYCL 138
++AFDVCRK CL
Sbjct: 603 STAFDVCRKSCL 614
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 280 SMSLPRPAHQSQTGNDESIHLHI 212
S S P+PAHQ Q G LH+
Sbjct: 468 SFSQPQPAHQMQQGAPLQRSLHV 490
>03_05_1136 +
30634685-30634919,30635008-30635303,30635398-30635790,
30635856-30636348,30636422-30636918
Length = 637
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = +3
Query: 108 WKSPSAPVC--VKAVLSTYV 161
W+SP+APVC V AVL + V
Sbjct: 2 WRSPAAPVCLLVAAVLLSAV 21
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 156 MSKVLPLHTLAQKATSNNDSSR*KRPHKD 70
+ K+LPLH++ +K T + K H D
Sbjct: 246 LKKMLPLHSILKKYTKHTSVKMVKEKHGD 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,976,688
Number of Sequences: 37544
Number of extensions: 122358
Number of successful extensions: 286
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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