Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1041
         (286 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)                 28   1.4  
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)              27   1.8  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             27   2.4  
SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)            27   2.4  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   26   4.2  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   26   5.6  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         26   5.6  
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   25   7.4  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                25   7.4  
SB_24352| Best HMM Match : PaREP8 (HMM E-Value=4.1)                    25   9.8  
SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)          25   9.8  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_25056| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_15488| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00019)          25   9.8  

>SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)
          Length = 428

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +1

Query: 223 VCSHRCLSGSGVLVEEDSC 279
           +C+ +C +G GV++EE++C
Sbjct: 52  LCTIKCKNGPGVVIEEEAC 70


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 139 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 246
           R + RH ++   +F R+ H  NR++Y+G  ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399


>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
          Length = 245

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 191 RILEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDCN 57
           R L+ + SA  VC +YCLY  W R R  ++  +   + T  TD N
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRARNKSLQDI-TTMFTPHTDWN 141


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 191 RILEKITSAFDVCRKYCLYTHWRRRR 114
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 191 RILEKITSAFDVCRKYCLYTHWRRRR 114
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)
          Length = 590

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 161 DVCRKYCLYTHWR-----RRRLPTMTRLDENVRTKTTDCNLF 51
           D+    CL T  R     RRRLP   RL +    +T D NLF
Sbjct: 76  DIINDNCLLTLSRANQELRRRLPLKPRLHDRTVARTLDGNLF 117


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 191  RILEKITSAFDVCRKYCLYTHWRRRR 114
            R L+ + SA  VC +YCLY  W R R
Sbjct: 965  RQLQALDSA--VCGQYCLYFLWHRVR 988


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 191  RILEKITSAFDVCRKYCLYTHWRR 120
            R L+ + SA  VC +YCLY  W+R
Sbjct: 1284 RQLQALDSA--VCGQYCLYFLWQR 1305


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 211 KYEGVCSHRCLSG 249
           K++ VCSHRC SG
Sbjct: 316 KFDQVCSHRCPSG 328


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 191  RILEKITSAFDVCRKYCLYTHWRR 120
            R L+ + SA  VC +YCLY  W R
Sbjct: 1878 RQLQALDSA--VCGQYCLYFLWHR 1899


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 283 DSMSLPRPAHQSQTGNDESIHL 218
           D + +P P H+++T NDE  ++
Sbjct: 434 DELIIPPPRHRTETHNDEKFNV 455


>SB_24352| Best HMM Match : PaREP8 (HMM E-Value=4.1)
          Length = 176

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 129 VCVKAVLSTYVKRTCYFFENSPLNKSHQ 212
           +C+   L  Y+KRT    E +P +K+++
Sbjct: 50  ICMHLHLEKYMKRTASKLEQTPFSKANE 77


>SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)
          Length = 1024

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 185  LEKITSAFDVCRKYCLYTHWRRRR 114
            L+ + SA  VC +YCL+  W R R
Sbjct: 938  LQALNSA--VCGQYCLFFLWHRTR 959


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 185  LEKITSAFDVCRKYCLYTHWRRRR 114
            L+ + SA  VC +YCL+  W R R
Sbjct: 2285 LQALNSA--VCGQYCLFFLWHRTR 2306


>SB_25056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 158 VCRKYCLYTHWRRRR 114
           VC +YCLY  W R R
Sbjct: 29  VCGQYCLYFLWHRVR 43


>SB_15488| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00019)
          Length = 589

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 185 LEKITSAFDVCRKYCLYTHWRRRR 114
           L+ + SA  VC +YCL+  W R R
Sbjct: 497 LQALNSA--VCGQYCLFFLWHRTR 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,401,918
Number of Sequences: 59808
Number of extensions: 151418
Number of successful extensions: 325
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)