Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1041
         (286 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119190-1|AAM51050.1|  449|Drosophila melanogaster SD11486p pro...    31   0.30 
AE014296-1406|AAF50459.2|  449|Drosophila melanogaster CG7213-PA...    31   0.30 
EF120977-1|ABO93155.1| 1349|Drosophila melanogaster misfire prot...    28   2.1  
AF038582-1|AAB97002.1|  425|Drosophila melanogaster QKR54B protein.    27   3.7  
BT023617-1|AAY85017.1|  121|Drosophila melanogaster IP05930p pro...    27   4.9  
AE014134-2021|AAF53061.1|  120|Drosophila melanogaster CG14915-P...    27   4.9  
U19731-1|AAB60231.1|  400|Drosophila melanogaster phyllopod prot...    26   6.5  
U19722-1|AAA65733.1|  400|Drosophila melanogaster phyllopod prot...    26   6.5  
L38294-1|AAA66168.1|  400|Drosophila melanogaster protein ( Dros...    26   6.5  
AY075531-1|AAL68338.1|  400|Drosophila melanogaster RH04401p pro...    26   6.5  
AE013599-1895|AAF58245.1|  400|Drosophila melanogaster CG10108-P...    26   6.5  
AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein ...    26   8.6  
AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    26   8.6  

>AY119190-1|AAM51050.1|  449|Drosophila melanogaster SD11486p
           protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 53  INYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLF 178
           +N   L+L  +  L  ++ +V   +SVC G T+DI+ + L F
Sbjct: 114 VNVKCLNLLLQSELQRAISKVKTASSVCSGRTYDIKYSVLTF 155


>AE014296-1406|AAF50459.2|  449|Drosophila melanogaster CG7213-PA
           protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 53  INYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLF 178
           +N   L+L  +  L  ++ +V   +SVC G T+DI+ + L F
Sbjct: 114 VNVKCLNLLLQSELQRAISKVKTASSVCSGRTYDIKYSVLTF 155


>EF120977-1|ABO93155.1| 1349|Drosophila melanogaster misfire
           protein.
          Length = 1349

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 168 CV*RMSKVLPLHTLAQKATSNNDSSR 91
           CV R S+++P HTL+ K     D +R
Sbjct: 14  CVLRRSRLMPTHTLSSKTVPGLDETR 39


>AF038582-1|AAB97002.1|  425|Drosophila melanogaster QKR54B protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 191 RILEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDC 60
           RIL   T  F   R+ C   HWRR  +    RL    ++++  C
Sbjct: 382 RILSAFTRLFCWRRRRCRSGHWRRFSIKCHRRLWSQFQSQSQPC 425


>BT023617-1|AAY85017.1|  121|Drosophila melanogaster IP05930p
           protein.
          Length = 121

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 206 ASNMKVYALIVACLALVCWSR 268
           +S + +  L++ACL L+ W+R
Sbjct: 4   SSKLALLILVIACLVLIAWAR 24


>AE014134-2021|AAF53061.1|  120|Drosophila melanogaster CG14915-PA
           protein.
          Length = 120

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 206 ASNMKVYALIVACLALVCWSR 268
           +S + +  L++ACL L+ W+R
Sbjct: 3   SSKLALLILVIACLVLIAWAR 23


>U19731-1|AAB60231.1|  400|Drosophila melanogaster phyllopod
           protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 114 SPSAPVCVKAVLSTYVKRTC 173
           +PSA V   A  S Y+KRTC
Sbjct: 10  NPSAAVAAPAASSEYLKRTC 29


>U19722-1|AAA65733.1|  400|Drosophila melanogaster phyllopod
           protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 114 SPSAPVCVKAVLSTYVKRTC 173
           +PSA V   A  S Y+KRTC
Sbjct: 10  NPSAAVAAPAASSEYLKRTC 29


>L38294-1|AAA66168.1|  400|Drosophila melanogaster protein (
           Drosophila melanogasterphyllopod mRNA. ).
          Length = 400

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 114 SPSAPVCVKAVLSTYVKRTC 173
           +PSA V   A  S Y+KRTC
Sbjct: 10  NPSAAVAAPAASSEYLKRTC 29


>AY075531-1|AAL68338.1|  400|Drosophila melanogaster RH04401p
           protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 114 SPSAPVCVKAVLSTYVKRTC 173
           +PSA V   A  S Y+KRTC
Sbjct: 10  NPSAAVAAPAASSEYLKRTC 29


>AE013599-1895|AAF58245.1|  400|Drosophila melanogaster CG10108-PA
           protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 114 SPSAPVCVKAVLSTYVKRTC 173
           +PSA V   A  S Y+KRTC
Sbjct: 10  NPSAAVAAPAASSEYLKRTC 29


>AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein
           protein.
          Length = 826

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 188 ILEKITSAFDVCRKYCLYTH 129
           +++ +T  F+VCRKY L  H
Sbjct: 75  MIKNLTDVFNVCRKYNLKLH 94


>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 188 ILEKITSAFDVCRKYCLYTH 129
           +++ +T  F+VCRKY L  H
Sbjct: 75  MIKNLTDVFNVCRKYNLKLH 94


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,955
Number of Sequences: 53049
Number of extensions: 220035
Number of successful extensions: 460
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 465714480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)