Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1041
         (286 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61952-4|AAK84529.1|  267|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    25   8.7  
AL590343-1|CAC35865.1|  387|Caenorhabditis elegans Hypothetical ...    25   8.7  
AL032622-1|CAA21497.1|  387|Caenorhabditis elegans Y66A7A.1 prot...    25   8.7  

>U61952-4|AAK84529.1|  267|Caenorhabditis elegans Hypothetical
           protein F42A9.7 protein.
          Length = 267

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 AQKATSNNDSSR*KRPHKDNRL*FI 52
           +QK +SNN S +    H DN++ ++
Sbjct: 130 SQKLSSNNSSEKQLNAHNDNKISYV 154


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +2

Query: 50  KINYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFF 181
           KI     SL  R+ ++E L    F        TF IR THLLFF
Sbjct: 213 KIRIKYYSLSVRYEMEEILQSSKF--------TFIIRFTHLLFF 248


>AL590343-1|CAC35865.1|  387|Caenorhabditis elegans Hypothetical
           protein Y66A7A.1 protein.
          Length = 387

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 108 WKSPSAPVCVKAVLSTYVKRTCYF 179
           W   +  +C   +LST+VK   YF
Sbjct: 279 WTQATTLICGAHILSTFVKHLTYF 302


>AL032622-1|CAA21497.1|  387|Caenorhabditis elegans Y66A7A.1
           protein.
          Length = 387

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 108 WKSPSAPVCVKAVLSTYVKRTCYF 179
           W   +  +C   +LST+VK   YF
Sbjct: 279 WTQATTLICGAHILSTFVKHLTYF 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,142,291
Number of Sequences: 27780
Number of extensions: 112692
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)