Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1041
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.8  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 183 RKNNKCV*RMSKVLPLHTLAQKAT 112
           R +N    R+SKV+  HT+  K T
Sbjct: 5   RLSNVATFRLSKVMLDHTINSKKT 28


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 65  LLSLCGRFHLDESLLEVAFCASVC 136
           LL LC +F + +  L ++   S C
Sbjct: 496 LLDLCTKFLMHKDSLGLSTATSTC 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,394
Number of Sequences: 438
Number of extensions: 1209
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)