Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1040X
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    87   1e-18
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    87   1e-18
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   1.1  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   2.6  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.9  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.9  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 87.0 bits (206), Expect = 1e-18
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
           RP SKVIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+N+CGVISP
Sbjct: 28  RPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISP 77



 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVR +VL+D L +I NAE+RG+RQVLI P  K  + F
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKF 37


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 87.0 bits (206), Expect = 1e-18
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
           RP SKVIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+N+CGVISP
Sbjct: 28  RPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISP 77



 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVR +VL+D L +I NAE+RG+RQVLI P  K  + F
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKF 37


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +3

Query: 54  VTICKENSFAILSDTLFPLKSYKNN*HSS----DNLLFHGVLTTMVRMNVLSDALKSIHN 221
           + ICK+NSF  +++ L+   +   N H +     NL F+G +  ++       + KS+ N
Sbjct: 301 IRICKDNSFVRINNDLWSTVADFMNQHKAIKPDTNLPFYGGIMGIIGYECSDLSTKSVSN 360

Query: 222 A 224
           A
Sbjct: 361 A 361


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 105 PLKSYKNN*HSSDNLLFHGVLTTMVRMNVLSDALKSIHNAE 227
           PL+  +NN H+  + L H VL T  ++ V     K++ + E
Sbjct: 164 PLRKPENNPHTGRSALLHRVLDTNWQVQVTPREPKNLQSQE 204


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 280 LNDDFGTGPMRTCLFPRFSALC 215
           L DDF T  +R  L PR   LC
Sbjct: 902 LADDFMTSRIRQDLLPRLETLC 923


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +3

Query: 42  IIQTVTICKENSFAILSDTLFPLKSYKNN*HSSDNLLFHGVLTTMVRMNVLSDALKSI 215
           II  ++I K    +I S+ L  L S KN   S +    HG     VR+NV+ DAL+S+
Sbjct: 534 IIIFISILKRPLASICSEDLNCLISVKNRLISFET---HG----FVRLNVVMDALESM 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,585
Number of Sequences: 5004
Number of extensions: 25820
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)