Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1040X
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 92 1e-19
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 92 1e-19
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 55 2e-08
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 36 0.012
03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389 31 0.46
12_02_0289 - 16914975-16916238,16916246-16916484 27 4.3
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 27 4.3
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 27 7.5
12_01_0083 - 670613-670616,673149-674077,674652-674818,675520-67... 26 9.9
11_01_0082 - 625869-627065 26 9.9
07_01_0802 - 6287180-6287605 26 9.9
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 92.3 bits (219), Expect = 1e-19
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +2
Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
RP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLN+CGVISP
Sbjct: 28 RPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISP 77
Score = 51.2 bits (117), Expect = 3e-07
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
MVR++VL+DALK+++NAEKRGKRQVLI P K + F
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKF 37
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 92.3 bits (219), Expect = 1e-19
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +2
Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
RP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLN+CGVISP
Sbjct: 28 RPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISP 77
Score = 50.4 bits (115), Expect = 5e-07
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +3
Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
MVR++VL+DALK+++NAEKRGKRQV+I P K + F
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKF 37
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 54.8 bits (126), Expect = 2e-08
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +2
Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVIS 400
+P S V+V FL +M GYI +FE++D HR GKI V L GR+ C ++
Sbjct: 27 QPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALT 75
Score = 33.5 bits (73), Expect = 0.065
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 189 VLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
+L+DAL+++ NAE+RGK L+ P+ +SF
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSF 36
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 35.9 bits (79), Expect = 0.012
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 329 VDDHRAGKIVVNLTGRLNQCGVIS 400
VDDH++G+I++ GRLN+ GVIS
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVIS 935
>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
Length = 711
Score = 30.7 bits (66), Expect = 0.46
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 159 GVLTTMVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSS 275
G+ TTM+ ++A++ +H R +VL+ P+PK S
Sbjct: 665 GLKTTMLVSRFAANAMRGVHRQRSRRADEVLMMPMPKPS 703
>12_02_0289 - 16914975-16916238,16916246-16916484
Length = 500
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 110 KWK*CITKNRKRILFTN 60
+W+ I KNR+R+LFTN
Sbjct: 166 QWRELIAKNRQRLLFTN 182
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 215 YRF*GVTQYVHTHHGCQ 165
+RF GVT ++THHG Q
Sbjct: 470 FRFDGVTSMMYTHHGLQ 486
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 60 ICKENSFAILSDTLFPLKSYKNN 128
IC++NSF L + + +YKN+
Sbjct: 356 ICRQNSFQFLQERIMQTAAYKND 378
>12_01_0083 -
670613-670616,673149-674077,674652-674818,675520-675628
Length = 402
Score = 26.2 bits (55), Expect = 9.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 399 EMTPHWFSLP 370
EMTPHW SLP
Sbjct: 269 EMTPHWVSLP 278
>11_01_0082 - 625869-627065
Length = 398
Score = 26.2 bits (55), Expect = 9.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 399 EMTPHWFSLP 370
EMTPHW SLP
Sbjct: 189 EMTPHWVSLP 198
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.2 bits (55), Expect = 9.9
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +1
Query: 340 QSWQDCCKSHRQTKPVWC 393
Q WQDCC+ WC
Sbjct: 51 QVWQDCCRQLAAVDDGWC 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,032,490
Number of Sequences: 37544
Number of extensions: 146848
Number of successful extensions: 307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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