Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1040X
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             48   3e-06
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       27   5.8  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVR+NVL+DAL SI NAEKRGKRQV I P  K  + F
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKF 37



 Score = 36.7 bits (81), Expect = 0.007
 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN-LTGRLNQCGVI 397
           RP SKVIVKFLTVMMKH        V   R G++V    +G L+  GV+
Sbjct: 28  RPSSKVIVKFLTVMMKH--------VAQPRIGEMVTRPCSGALSAAGVV 68


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 84   ILSDTLFPLKSYKNN*HSSDNLLFHGVLTTMVRMNVLSD 200
            +  +T+ P KSYK N   +D LLF      + + ++L+D
Sbjct: 1527 VQKETIHPRKSYKMNSSCADILLFAAYKWNIFKPSLLAD 1565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,998,758
Number of Sequences: 59808
Number of extensions: 182866
Number of successful extensions: 1014
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)