Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1040X
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...    97   3e-21
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    27   5.1  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score = 97.5 bits (232), Expect = 3e-21
 Identities = 45/50 (90%), Positives = 47/50 (94%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
           RP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLN+  VISP
Sbjct: 28  RPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISP 77



 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 26/37 (70%), Positives = 30/37 (81%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVRMNVL+DAL +I+NAEKRGKRQVLI P  K  + F
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRF 37


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 84   ILSDTLFPLKSYKNN*HSSDNLLFHGVLTTMVRMNVLSDALKSIHN 221
            +  +T+ P KSYK N   +D LLF      + R ++++D+   + N
Sbjct: 1602 VQKETIHPRKSYKMNSSCADVLLFAQYKWNVSRPSLMADSKDVMDN 1647


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,187,399
Number of Sequences: 27780
Number of extensions: 141543
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)