Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1040X
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   9.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -3

Query: 349 ASSVIINDFKLSDVTVLHHH 290
           A+  +++ F++ +VT++ HH
Sbjct: 344 ANVAVLHSFQMKNVTIVDHH 363


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 405 GGEMTPHWFSLPVRFTTILPAL*SSTISNSPM 310
           GG    H    P+      P L SST + SPM
Sbjct: 302 GGPRKSHESQCPMLQKLEKPVLSSSTTTTSPM 333


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 201 RHSIRSYAPWLSKHRETRGY 142
           R S+R+Y   +S H E  G+
Sbjct: 45  RSSLRNYKTLISSHDELPGH 64


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 405 GGEMTPHWFSLPVR 364
           GG+ T HWF   +R
Sbjct: 19  GGKHTVHWFRKGLR 32


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 296 SSLLKT*R*LWNRADEDLSFPSLF 225
           SSLL+  R ++ + D+  + PS+F
Sbjct: 383 SSLLRYPRSIFRQTDDHQNSPSIF 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,400
Number of Sequences: 438
Number of extensions: 1483
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)