Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1040X
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...    92   1e-19
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...    92   1e-19
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...    92   1e-19
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...    92   1e-19
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)          91   2e-19
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    53   8e-08
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          52   1e-07
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy...    30   0.68 
At3g27080.1 68416.m03387 mitochondrial import receptor subunit T...    29   1.6  
At1g18390.1 68414.m02297 protein kinase family protein contains ...    28   2.1  
At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr...    27   3.6  
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta...    27   3.6  
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    27   4.8  
At1g10490.1 68414.m01181 expressed protein contains Pfam profile...    27   6.3  
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi...    26   8.3  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/50 (82%), Positives = 44/50 (88%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
           RP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLN+CGVISP
Sbjct: 28  RPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVR++VL+DALKS++NAEKRGKRQV+I P  K  + F
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 37


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/50 (82%), Positives = 44/50 (88%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
           RP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLN+CGVISP
Sbjct: 28  RPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77



 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVR++VL+D LKS++NAEKRGKRQV+I P  K  + F
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKF 37


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/50 (82%), Positives = 44/50 (88%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
           RP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLN+CGVISP
Sbjct: 28  RPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVR++VL+DALKS++NAEKRGKRQV+I P  K  + F
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 37


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/50 (82%), Positives = 44/50 (88%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
           RP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLN+CGVISP
Sbjct: 28  RPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISP 77



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVR++VL+DALKS++NAEKRGKRQV+I P  K  + F
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKF 37


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 41/50 (82%), Positives = 43/50 (86%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVISP 403
           RP SKVI+KFLTVM KHGYI EFE VDDHR+GKIVV L GRLN CGVISP
Sbjct: 34  RPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISP 83



 Score = 46.4 bits (105), Expect = 7e-06
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 174 MVRMNVLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           MVR +VL+D LKS+ NAEK+GKRQV+I P  K  + F
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKF 43


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 52.8 bits (121), Expect = 8e-08
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVIS 400
           +P S V+  FL +M + GYI  F++ D HR G+I V+L GR+N C  ++
Sbjct: 27  KPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALT 75



 Score = 33.1 bits (72), Expect = 0.072
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 189 VLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           +L+DAL++I NAE+RGK  V + P+     SF
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSF 36


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGVIS 400
           +P S V+  FL +M + GYI  F++ D HR G+I V+L GR+N C  ++
Sbjct: 27  KPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALT 75



 Score = 34.7 bits (76), Expect = 0.024
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +3

Query: 189 VLSDALKSIHNAEKRGKRQVLIGPVPKSSLSF 284
           +L+DAL++I NAEKRGK  V + PV     SF
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSF 36


>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
           Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
           conatins Pfam profile: PF00067 cytochrome P450
          Length = 407

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 239 KTSPHRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 367
           KT  H+  S +I   L ++ K   IG F+I  DH  G + V++
Sbjct: 187 KTEQHQDHSNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSV 229


>At3g27080.1 68416.m03387 mitochondrial import receptor subunit
           TOM20-3 /  translocase of outer membrane 20 kDa subunit
           3 (TOM20-3) identical to mitochondrial import receptor
           subunit TOM20-3 SP:P82874 from [Arabidopsis thaliana]
          Length = 202

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 114 SYKNN*HSSDNLL-FHGVLTTMVRMNVLSDALKSIHNAEKRGKRQVLIGP 260
           +YK+N   +DNL  + GVL  + + + +SDA + I  A  + +  +LI P
Sbjct: 23  TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 72


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 254 RPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 358
           RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 557 RPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
           protein, yeast, PIR:S54389~Contains 'Homeobox' domain
           signature and profile AA305-328
          Length = 602

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 48  QTVTICKENSFAILSDTLFPLKSYKNN*HSSDNLLFHGVLTTMVRMNVLSDALKSIHNAE 227
           QTV+  +  SF +   + FP  S   +  S+D    HGVL       +++D L ++H+ +
Sbjct: 55  QTVSRKRSISFPLPLPSDFPSSSTITSNVSADTARIHGVLE-----EIMADVLSNLHDIQ 109

Query: 228 K 230
           K
Sbjct: 110 K 110


>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-1) nearly identical to
           starch branching enzyme class II [Arabidopsis thaliana]
           GI:619939
          Length = 858

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 215 YRF*GVTQYVHTHHGCQ 165
           +RF GVT  ++THHG Q
Sbjct: 483 FRFDGVTSMMYTHHGLQ 499


>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1163

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 93  DTLFPLKSYKNN*HSSDNLLFHGVLTTMVRMNVLSDALKSIH 218
           DTL  LK YK++ H    LLF G  T     N+LS  L+ +H
Sbjct: 555 DTLKFLKIYKHSNHIKSKLLFSGDDT-----NLLSSRLRLLH 591


>At1g10490.1 68414.m01181 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1028

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 280 LNDDFGTGPM--RTCLFPRFSALCIDFKASLNTFIRTMV 170
           LNDDF  GP+  + C   +  A+   F A L+  +R++V
Sbjct: 241 LNDDFPVGPLINKCCTLDQGKAVVTFFDAILDKTLRSIV 279


>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
           histidine--tRNA ligase, putative similar to SP|P12081
           Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
           ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
           PF00587: tRNA synthetase class II core domain (G, H, P,
           S and T), PF03129: Anticodon binding domain
          Length = 479

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 272 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNQCGV 394
           IVK LT ++    IG++E+  +HR  K+   L G L  CGV
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGV 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,656,686
Number of Sequences: 28952
Number of extensions: 128669
Number of successful extensions: 243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)