Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1039X
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0054 + 416626-417297,417757-417885,418197-418301,418385-41...    29   1.5  
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900...    28   3.5  
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713...    27   6.1  
05_04_0069 - 17639386-17641380                                         27   8.1  
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940...    27   8.1  
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664...    27   8.1  
02_05_0763 + 31583449-31583747,31584095-31584230,31584544-315845...    27   8.1  

>11_01_0054 +
           416626-417297,417757-417885,418197-418301,418385-418778,
           419186-419283,419366-419614,419784-419843
          Length = 568

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +1

Query: 244 GCAGEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHV-VANELKALASLY-LKRSYHYL 417
           GC G +D    ++DQ C ++L +   S YY      HV V + +KA+ +L  L  SY   
Sbjct: 246 GCNGIDDDALTSLDQECSKSLQVLDMSNYYNV---THVGVLSIVKAMPNLLELNLSYCSP 302

Query: 418 LSASYFNNYQ 447
           ++ S  ++++
Sbjct: 303 VTPSMSSSFE 312


>01_04_0143 +
           16689471-16689498,16689687-16689818,16689974-16690013,
           16690214-16690280,16690349-16690431,16690755-16690821,
           16692741-16692821,16693696-16693791,16694172-16694198
          Length = 206

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 162 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 251
           CY  E + L++ HQI  C ++ S  V +W C
Sbjct: 71  CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101


>08_02_1144 +
           24670224-24670607,24670723-24670928,24671211-24671310,
           24671539-24672864
          Length = 671

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = +1

Query: 106 RLLRQCV*RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGEEDSCYQNVD 285
           R LR      +   TS  L +F      +NRI   G  + RCL+ + C+  +DS    + 
Sbjct: 109 RALRAAAAAAFSAVTSLDLSMFPPTNAILNRI-LAGNGALRCLAVN-CSLLDDSAVGAIA 166

Query: 286 QGCRRTLSLPHCSAY 330
           +G  R LSL  CS++
Sbjct: 167 KGSLRELSLLKCSSF 181


>05_04_0069 - 17639386-17641380
          Length = 664

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 86  DESLLEVAFCASVCKGSTFDIRQTHLL-FFREFATK*IASNMKVYALIVAC 235
           + S ++VA C ++  G + + + +  L  FREF  + I  N+  +  IVAC
Sbjct: 216 ESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVAC 266


>03_05_1097 +
           30393336-30393578,30393661-30393780,30393859-30394017,
           30394184-30394225,30394336-30394508,30394600-30394705,
           30394795-30394824
          Length = 290

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +1

Query: 265 SCYQNVDQGCRRTLSLPH-----CSAYYGQFKDNHVVANELKALASLYLKRSYHYL 417
           S YQ V    +  + +PH     CSA+Y   + +HV    +     +   R+ HYL
Sbjct: 14  SAYQEVKSSPKHAI-VPHNNLLGCSAFYNPVEGHHVQKPHIVPSCKVNFTRASHYL 68


>03_02_0235 +
           6644083-6644125,6645218-6645315,6645448-6645498,
           6645573-6645686,6645771-6645971,6646047-6646148,
           6647245-6647352,6647745-6647995,6648108-6648279,
           6648341-6648397,6648555-6648710,6648807-6648857,
           6649053-6649193,6649270-6649464,6649534-6649665,
           6649768-6649941,6650396-6650635,6650761-6650955
          Length = 826

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 360 YNVVVLELAVIRAAVRQT*SPSASLVDVLIA*VFL 256
           YN V+LE A +RA+   T +   +LVD L   +F+
Sbjct: 422 YNRVILENATVRASAVSTLAKFGALVDALKPRIFV 456


>02_05_0763 +
           31583449-31583747,31584095-31584230,31584544-31584593,
           31585586-31585852,31586481-31586708,31586873-31587011,
           31587091-31587161,31587313-31587412,31588201-31588264,
           31588346-31588417,31588500-31588720
          Length = 548

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +1

Query: 217 CSHR-CLSGSGCAGEEDSCYQNVDQGCRRTLS 309
           CSH  C   SGC   +  C  N+D     T S
Sbjct: 193 CSHELCSPASGCTNPKQPCPYNIDYFSENTTS 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,094,883
Number of Sequences: 37544
Number of extensions: 251414
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)