Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1039X
(489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 31 0.51
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 28 4.7
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_11943| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 6.3
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1) 27 6.3
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33) 27 8.3
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_33426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05) 27 8.3
SB_52619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 196 RIKYEGVCSHRCLSGSGCAGEEDSCYQNVDQGCRRTLSLP 315
R+ + GVC + C + CAG++ C GC RT + P
Sbjct: 574 RVDHVGVCVNYCGTDGDCAGDKKCC----SNGCGRTCTSP 609
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 232 LSGSGCAGEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVV 360
++GS C GE++SC N D C L H + K N VV
Sbjct: 548 INGSTCDGEKNSC--NSDGDCLDDLKCCHSGCHKQCVKPNQVV 588
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -3
Query: 349 CP*IGRNTRCSAADLKSVC-----ILGRRSDSMSLPRQHTQSQ 236
CP G CS+A + SVC ++GR++ M+ R+ ++Q
Sbjct: 104 CPQGGAQLACSSAGMGSVCWVTGGVMGRKTAQMARTRKDVENQ 146
>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 130 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 237
R + RH ++ +F R+ H NR++Y+G ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399
>SB_11943| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 591
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -3
Query: 289 LGRRSDSMSLPRQHTQ---SQTGNDES 218
L R D+ +L R +TQ SQTGNDES
Sbjct: 468 LDNRRDASNLSRTNTQIDQSQTGNDES 494
>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
Length = 245
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 182 RILEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDCN 48
R L+ + SA VC +YCLY W R R ++ + + T TD N
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRARNKSLQDI-TTMFTPHTDWN 141
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 182 RILEKITSAFDVCRKYCLYTHWRRRR 105
R L+ + SA VC +YCLY W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123
>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
Length = 184
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 182 RILEKITSAFDVCRKYCLYTHWRRRR 105
R L+ + SA VC +YCLY W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 264 VFLASTPRARQATMRAYTFIFDAIYLVANSRKN 166
VF +TP R A++ + ++ IYL+A ++N
Sbjct: 154 VFRVATPYIRLASILVFIIMYLKIYLIARKQRN 186
>SB_33426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 246 VCWRGRL--MLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEGISLTVF 395
+CW G L M ER P + +Q+ R +GQ +CS+ T SL F
Sbjct: 48 LCWSGHLARMPDERLPNI---LLVGGVQQEKRSQRGQKKCSKDTLKASLRAF 96
>SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)
Length = 590
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -2
Query: 152 DVCRKYCLYTHWR-----RRRLPTMTRLDENVRTKTTDCNLF 42
D+ CL T R RRRLP RL + +T D NLF
Sbjct: 76 DIINDNCLLTLSRANQELRRRLPLKPRLHDRTVARTLDGNLF 117
>SB_52619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 385 SLYLKRSYHYLLSASYFNNYQTNREGFANS-SEYRR 489
SLY+ S++YL+ S+F N N ANS SE+R+
Sbjct: 443 SLYMHNSFYYLI--SHFWNQLPNSAKAANSVSEFRK 476
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,308,464
Number of Sequences: 59808
Number of extensions: 299117
Number of successful extensions: 748
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -