Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1039X
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical p...    31   0.34 
AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical ...    31   0.34 
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    29   2.4  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    29   2.4  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    27   7.3  
AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like ...    27   9.7  

>Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 199 IKYEGVCSHRCLSGSGCAGEEDSCYQNVDQGCRRTLSLPHCSAYYGQ 339
           +K+ G   H C+ GSG   E     +  DQ   RT+S+  CS  +G+
Sbjct: 182 LKHSGRLGHSCVYGSGTWSERRQYEEPFDQVSERTISI--CSTGHGE 226


>AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 199 IKYEGVCSHRCLSGSGCAGEEDSCYQNVDQGCRRTLSLPHCSAYYGQ 339
           +K+ G   H C+ GSG   E     +  DQ   RT+S+  CS  +G+
Sbjct: 182 LKHSGRLGHSCVYGSGTWSERRQYEEPFDQVSERTISI--CSTGHGE 226


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +3

Query: 213 CMLSSLPVWLWVCWRGRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 353
           C + ++P  L +   GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 102 CDIIAIPGKLEIA--GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 183 PLNKSHQI*RCMLSSLPVWLWVCWRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCS 362
           P+   + +  C        L+  W G L  S     +QT+     L R  + I G    S
Sbjct: 112 PVYVPYHLEACAEEQRRTQLYRWWHGNLPASSANKLLQTEKNGTYLLRASQHIPGALVIS 171

Query: 363 ERTEG--ISLTVFE 398
            +TEG  + LT+++
Sbjct: 172 AKTEGQVVHLTIYQ 185


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 183 PLNKSHQI*RCMLSSLPVWLWVCWRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCS 362
           P+   + +  C        L+  W G L  S     +QT+     L R  + I G    S
Sbjct: 112 PVYVPYHLEACAEEQRRTQLYRWWHGNLPASSANKLLQTEKNGTYLLRASQHIPGALVIS 171

Query: 363 ERTEG--ISLTVFE 398
            +TEG  + LT+++
Sbjct: 172 AKTEGQVVHLTIYQ 185


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 205  YEGVCSHRCLSGSGCAGEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDN 351
            + G      +  S CA +E  C   +   CRR  +  +C+ Y G  KD+
Sbjct: 1629 FTGAFCETAIDESNCALDEKDCVFGL---CRRENAQVYCNCYDGYMKDS 1674


>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 261 FLASTPRARQATMRAYTFIFDAIYL 187
           F A TP+ R   ++  +F+FD++Y+
Sbjct: 265 FAAYTPKIRSVLLQIVSFVFDSLYV 289


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 336 PIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIRELF 476
           P    P   E +E   L  FE++  L+ +G  L    +EQ ++R  F
Sbjct: 214 PEPSTPESVETSEKSHLLSFESYFQLASMGSELMTYSEEQRQVRNYF 260


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 243 WVCWRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPR-CSERTEGISLTVFETFLPLSP 419
           W+  +  L++  R    +TD K+A   ++++ +  + + C E  +GI L + E  + +  
Sbjct: 518 WMVKQKELLIKARTSTDETDKKNAT--KLVKHLHKKIKACKEEVDGILLKISEKSMVVDE 575

Query: 420 VGLLLQQLPDEQ 455
           +   +++L + Q
Sbjct: 576 IAAQIEELKNPQ 587


>AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like
           (grd related) protein31 protein.
          Length = 156

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
 Frame = +1

Query: 211 GVCSHRCLSGSGCAGEEDSCYQNVDQGC-RRTLSLPHCSAYYGQFKDNHVVANELKALAS 387
           G C   C  G GCA     C      GC R+  SLP    + G       V     AL  
Sbjct: 34  GGCGGGCGGGCGCAPPPPPCCGGGCGGCGRKKRSLPEKPTFVGIADSGDDVMCNTPALKK 93

Query: 388 LYLK 399
           + L+
Sbjct: 94  IILE 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,396,579
Number of Sequences: 27780
Number of extensions: 215531
Number of successful extensions: 516
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)