Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1038X
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 180 1e-46
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 174 7e-45
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 83 3e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 70 3e-13
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.1
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 1.5
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 3.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.4
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.9
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 5.9
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 5.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.7
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 7.7
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 7.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 180 bits (438), Expect = 1e-46
Identities = 82/139 (58%), Positives = 94/139 (67%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 260
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 261 TYPVXXXXXXXXXXXXXXXXAHTDSCFHPEQLITGNEDAANNYARGHYTIGKEIVDLVLD 440
P FHPEQLITG EDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 441 RIRKLADQCTGLQGFLIFH 497
+IR++AD C+GLQGFL+FH
Sbjct: 121 KIRRIADNCSGLQGFLVFH 139
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 174 bits (424), Expect = 7e-45
Identities = 84/144 (58%), Positives = 97/144 (67%), Gaps = 5/144 (3%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 245
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 246 TGAASTYPVXXXXXXXXXXXXXXXXAHTDSCFHPEQLITGNEDAANNYARGHYTIGKEIV 425
TG P FHPEQ++TG EDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 426 DLVLDRIRKLADQCTGLQGFLIFH 497
D VL+RIR++AD C+GLQGFL+FH
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFH 143
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 83.0 bits (196), Expect = 3e-17
Identities = 45/141 (31%), Positives = 62/141 (43%)
Frame = +3
Query: 81 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAS 260
MRE + + GQ G Q+G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 261 TYPVXXXXXXXXXXXXXXXXAHTDSCFHPEQLITGNEDAANNYARGHYTIGKEIVDLVLD 440
P + F P+ +I G A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 441 RIRKLADQCTGLQGFLIFHFL 503
+R+ A+ C LQGF + H L
Sbjct: 119 VVRREAEACDALQGFQLTHSL 139
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 69.7 bits (163), Expect = 3e-13
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Frame = +3
Query: 84 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAAST 263
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 264 YPVXXXXXXXXXXXXXXXXAHTDSCFHPEQ-LITGN-EDAANNYARGHYTIGKEIVDLVL 437
P S ++PE LIT N A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 438 DRIRKLADQCTGLQGFLIFH 497
D I + AD L+GF + H
Sbjct: 120 DMIDREADGSDSLEGFSLLH 139
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 316 ADLINNSRFKIDEDS--TGYVLAAPVSLKKVLKESSP 212
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 518 PVPSPKEVEDQESLQTGTLVSELADSV 438
P P P + ED L+TGTL +L + +
Sbjct: 97 PFPGPVDQEDIADLETGTLKPDLQEEI 123
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 334 LSVCASADLINNSRF--KIDEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIW 182
+ + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 210 IELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 179 WPDAHRQDHRGWRRFFQHFLQR 244
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 70 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 192
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 283 DEDSTGYVLAAPVSLKKVLKESSPPPMVLSVGIWPSG 173
++D T Y L P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKY-LGPPIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -3
Query: 515 VPSPKEVEDQESLQTGTLVSELADSVQNQIYDFLSN 408
+ P+ + D + L+ + + +V NQ++ LSN
Sbjct: 552 ISKPRSIGDAQKLEILEYLQSQSSTVSNQVFTLLSN 587
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 160 STASSLMARCPQTRPSGVETILSTLSSARP 249
ST SSL + ++PS T ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 134 ITDLDSGLANVYRDALTHFDLSF 66
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 321 AHTDSCFHPEQLITGNEDAANNYAR 395
+H D+ +H + L T N+D N AR
Sbjct: 66 SHVDTDYHGQALNTDNQDPKNYQAR 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,177
Number of Sequences: 5004
Number of extensions: 49961
Number of successful extensions: 166
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -