Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1038X
         (568 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    50   4e-08
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    42   1e-05
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    42   1e-05
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    42   1e-05
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    42   1e-05
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    27   0.032
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   9.2  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 50.4 bits (115), Expect = 4e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +3

Query: 81  MRECISVHVGQAGVQIGNACWE 146
           MRECISVHVGQAGVQIGN CW+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22



 Score = 33.9 bits (74), Expect = 0.004
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 136 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELQARTPC 273
           P    T WS AS+   RCP+TR S  E +++  + + P L   + C
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTRRS--EAVMTRSTPSSPRLAQASTC 62


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +3

Query: 399 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHFL 503
           HYT G E+VD VLD +RK  + C  LQGF + H L
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSL 35


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +3

Query: 399 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHFL 503
           HYT G E+VD VLD +RK  + C  LQGF + H L
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSL 35


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +3

Query: 399 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHFL 503
           HYT G E+VD VLD +RK  + C  LQGF + H L
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSL 35


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +3

Query: 399 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHFL 503
           HYT G E+VD VLD +RK  + C  LQGF + H L
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSL 35


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 27.5 bits (58), Expect(2) = 0.032
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 187 CPQTRPSGVETILSTLSSARPELQARTPCCLR 282
           C   RPS ++   ++ S  RP+L A +  C R
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAANSATCWR 195



 Score = 21.8 bits (44), Expect(2) = 0.032
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 130 VMPAGSFTAWSTASSLMARCPQTRPSGV 213
           V+ AG F AW TA        +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 110  PSRSPDR*CLLGALLPGARHPA*WPDAHRQDHR 208
            P+  P +  L+  +LP +  PA  P   R+D R
Sbjct: 1107 PAVEPAKKTLVATILPNSAKPAQQPPPLRRDAR 1139


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,622
Number of Sequences: 2352
Number of extensions: 12980
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53404389
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)