Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1038X
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.8  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   4.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   6.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   6.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   6.5  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 236 LQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQLFS 343
           L+  R+  H+    + D+EPTV         RQL S
Sbjct: 234 LEERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQLNS 269


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 144 PSRHYRSGLR 115
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 178 MARCPQTRPSGVETILSTLSSARPE 252
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 PTDKTIGGGDDSFNTFFSETGAAST 263
           PT+ TIGGG  + +   + + AA+T
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAAT 303


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 PTDKTIGGGDDSFNTFFSETGAAST 263
           PT+ TIGGG  + +   + + AA+T
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAAT 303


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 PTDKTIGGGDDSFNTFFSETGAAST 263
           PT+ TIGGG  + +   + + AA+T
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAAT 303


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 257 KHVPRAVFVDLEPTVVDEVRTGTYRQLFSSR 349
           K+  R  F  +EP + ++  TG      SSR
Sbjct: 148 KYKARQRFAKVEPALEEQFATGRVLACISSR 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,741
Number of Sequences: 438
Number of extensions: 3712
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)