Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1037
         (769 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q29R09 Cluster: LD28546p; n=7; Coelomata|Rep: LD28546p ...   107   4e-22
UniRef50_Q86M58 Cluster: Ubiquitin conjugating enzyme UBC-25; n=...    63   6e-09
UniRef50_Q4S862 Cluster: Chromosome 5 SCAF14709, whole genome sh...    63   8e-09
UniRef50_UPI0000F2BDCC Cluster: PREDICTED: similar to ubiquitin-...    61   3e-08
UniRef50_Q7Z7E8 Cluster: Ubiquitin-conjugating enzyme E2 Q1; n=6...    61   3e-08
UniRef50_Q4S863 Cluster: Chromosome 5 SCAF14709, whole genome sh...    44   0.003
UniRef50_UPI0000DA4011 Cluster: PREDICTED: similar to F-box prot...    35   2.6  
UniRef50_UPI0000E1FDC5 Cluster: PREDICTED: similar to ubiquitin-...    34   4.5  
UniRef50_Q8R2A3 Cluster: Vomeronasal receptor V1RE7; n=7; Murina...    34   4.5  

>UniRef50_Q29R09 Cluster: LD28546p; n=7; Coelomata|Rep: LD28546p -
           Drosophila melanogaster (Fruit fly)
          Length = 397

 Score =  107 bits (256), Expect = 4e-22
 Identities = 47/57 (82%), Positives = 52/57 (91%)
 Frame = +2

Query: 254 NINETYPTTPPVWFAESEDPIVTNAVQILTNTQGRDNHVINQVGILLRELCKLHGVP 424
           NI ETYP++PPVWFAESE+  VTNAVQIL+NT GRDNHVINQVGILLRELC+LH VP
Sbjct: 52  NITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRELCRLHNVP 108



 Score = 95.1 bits (226), Expect = 2e-18
 Identities = 40/51 (78%), Positives = 48/51 (94%)
 Frame = +3

Query: 102 MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHA 254
           MACLNTLK EIKTLE++FPKNHERFQI+++SVDEL CRF+ KNGK+Y+IHA
Sbjct: 1   MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNGKRYDIHA 51



 Score = 85.4 bits (202), Expect = 1e-15
 Identities = 41/53 (77%), Positives = 45/53 (84%)
 Frame = +1

Query: 577 LPLEMVEDAGRSNKDDMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMK 735
           LPLEM +    S KDDME EHLATLE+LRQ+QRQDYL GSVSGS+QATDRLMK
Sbjct: 177 LPLEMDDVRSTSKKDDMEVEHLATLEKLRQSQRQDYLKGSVSGSVQATDRLMK 229


>UniRef50_Q86M58 Cluster: Ubiquitin conjugating enzyme UBC-25; n=3;
           Caenorhabditis|Rep: Ubiquitin conjugating enzyme UBC-25
           - Caenorhabditis elegans
          Length = 387

 Score = 63.3 bits (147), Expect = 6e-09
 Identities = 29/58 (50%), Positives = 40/58 (68%)
 Frame = +3

Query: 102 MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHAT*MKHTP 275
           MACL  LK +I+ LE++FPKNH RFQI+SASVDEL+ +F+    K   + A   ++ P
Sbjct: 1   MACLRKLKEDIQVLEKLFPKNHNRFQILSASVDELSMKFINAENKGIIVTANIQENYP 58



 Score = 54.0 bits (124), Expect = 4e-06
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
 Frame = +2

Query: 248 TRNINETYPTTPPVWFAESED-PIVTNAVQILTNTQGRDNHVINQVGILLRELCKLHGV 421
           T NI E YP  PP+WF+ES+D P++  ++Q LT T+   N +++QV  L+ +LC  + +
Sbjct: 50  TANIQENYPRQPPIWFSESDDVPVIGMSLQRLTETEESTN-ILHQVHRLVSDLCSFYNL 107



 Score = 38.3 bits (85), Expect = 0.21
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 583 LEMVEDAGRSNKD-DMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMK 735
           +EM E+   S  D  +  E L  L++  +  RQ +L G V GS+ A+DRLMK
Sbjct: 170 VEMAEEDPTSQHDVGVSKEGLDMLDKASKINRQQHLDGKVQGSITASDRLMK 221


>UniRef50_Q4S862 Cluster: Chromosome 5 SCAF14709, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 5 SCAF14709, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 297

 Score = 62.9 bits (146), Expect = 8e-09
 Identities = 28/46 (60%), Positives = 39/46 (84%)
 Frame = +1

Query: 598 DAGRSNKDDMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMK 735
           D  +S  D +E E+LA LE++R+NQRQD+L+G+VSGS+QA+DRLMK
Sbjct: 23  DGKKSEDDGIEKENLAILEKIRKNQRQDHLNGAVSGSVQASDRLMK 68


>UniRef50_UPI0000F2BDCC Cluster: PREDICTED: similar to
           ubiquitin-conjugating enzyme E2Q; n=1; Monodelphis
           domestica|Rep: PREDICTED: similar to
           ubiquitin-conjugating enzyme E2Q - Monodelphis domestica
          Length = 547

 Score = 61.3 bits (142), Expect = 3e-08
 Identities = 28/45 (62%), Positives = 40/45 (88%), Gaps = 1/45 (2%)
 Frame = +1

Query: 604 GRSNKDD-METEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMK 735
           G+ ++DD +  E+LA LE++++NQRQDYL+G+VSGS+QATDRLMK
Sbjct: 339 GKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMK 383



 Score = 49.6 bits (113), Expect = 8e-05
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = +2

Query: 254 NINETYPTTPPVWFAESEDPIVTNAVQILTNTQGRDNHVINQVGILLRELCKLHGVPE 427
           NI E+YP  PP+W  ES+DP +   ++ L + +  +  ++  +  ++ +LCKL+ +P+
Sbjct: 232 NITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQ 289


>UniRef50_Q7Z7E8 Cluster: Ubiquitin-conjugating enzyme E2 Q1; n=66;
           Eumetazoa|Rep: Ubiquitin-conjugating enzyme E2 Q1 - Homo
           sapiens (Human)
          Length = 422

 Score = 61.3 bits (142), Expect = 3e-08
 Identities = 28/45 (62%), Positives = 40/45 (88%), Gaps = 1/45 (2%)
 Frame = +1

Query: 604 GRSNKDD-METEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMK 735
           G+ ++DD +  E+LA LE++++NQRQDYL+G+VSGS+QATDRLMK
Sbjct: 214 GKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMK 258



 Score = 49.6 bits (113), Expect = 8e-05
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = +2

Query: 254 NINETYPTTPPVWFAESEDPIVTNAVQILTNTQGRDNHVINQVGILLRELCKLHGVPE 427
           NI E+YP  PP+W  ES+DP +   ++ L + +  +  ++  +  ++ +LCKL+ +P+
Sbjct: 107 NITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQ 164



 Score = 46.0 bits (104), Expect = 0.001
 Identities = 25/64 (39%), Positives = 33/64 (51%)
 Frame = +3

Query: 120 LKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHAT*MKHTPPHHQSGLQ 299
           L+ E+K LE +F + HERF+I SA +DEL+C F+          A    H PP       
Sbjct: 41  LRRELKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVPGD 100

Query: 300 KVRI 311
            VRI
Sbjct: 101 PVRI 104


>UniRef50_Q4S863 Cluster: Chromosome 5 SCAF14709, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 5 SCAF14709, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 145

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +3

Query: 120 LKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIH 251
           LK E+K LE +F  NHERF+I+    DEL+C+F     K   IH
Sbjct: 19  LKAELKFLESIFDPNHERFRIIDWKPDELSCQFNVTGDKLLIIH 62



 Score = 42.3 bits (95), Expect = 0.013
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +2

Query: 254 NINETYPTTPPVWFAESEDPIVTNAVQILTNTQ 352
           NI E+YP+TPP+WF +S+DP +   ++ L + +
Sbjct: 64  NITESYPSTPPIWFVDSDDPSLAQVLERLDDVR 96


>UniRef50_UPI0000DA4011 Cluster: PREDICTED: similar to F-box protein
            18; n=1; Rattus norvegicus|Rep: PREDICTED: similar to
            F-box protein 18 - Rattus norvegicus
          Length = 1193

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +2

Query: 491  SVTSNGLNLVQRKMRKWQLRKMTLKEKMTCHLRWLKMLAVATRMTWKL 634
            SV S G+ L+QR  R W+ R   LK  M+    W K    AT   W L
Sbjct: 968  SVASRGMXLLQRT-RSWKRRSQXLKNTMSGSQNWXKGXRDATXKIWTL 1014


>UniRef50_UPI0000E1FDC5 Cluster: PREDICTED: similar to
           ubiquitin-conjugating enzyme UBCi; n=1; Pan
           troglodytes|Rep: PREDICTED: similar to
           ubiquitin-conjugating enzyme UBCi - Pan troglodytes
          Length = 115

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +3

Query: 120 LKLEIKTLEQVFPKNHERFQIMSASVDELTCRF 218
           L L+ ++ E +F KN ++F+I+S  +DEL C+F
Sbjct: 16  LLLKYQSPEHIFSKNRKQFRIISWKLDELHCQF 48


>UniRef50_Q8R2A3 Cluster: Vomeronasal receptor V1RE7; n=7;
           Murinae|Rep: Vomeronasal receptor V1RE7 - Mus musculus
           (Mouse)
          Length = 311

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 367 MIVSSLSVSEY-LNSICHNWILTFCKPDWWCGGVCFIYVACISYFFPFLPT 218
           +++ SL +  Y L+SI H  +  FC   WW   +  I   C     PF+ T
Sbjct: 242 LVLVSLFIGFYSLSSILHTCVALFCGAGWWMINITVIIHLCFPTLGPFIVT 292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,089,575
Number of Sequences: 1657284
Number of extensions: 14447595
Number of successful extensions: 37439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37421
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)