Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1037
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    29   0.73 
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    27   3.0  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.0  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    27   3.9  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   6.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   6.8  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 660 ETEPKAGLSIRQCVWQSPSHGQTHERSSGTYTV 758
           E EPK GL      WQ+     THER S TY +
Sbjct: 216 EAEPKKGL------WQASVTSSTHERKSKTYVI 242


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 358 RQSCNKPGWDIAARAMQT 411
           RQ C KPG+DI   ++QT
Sbjct: 48  RQYCTKPGYDIYGNSVQT 65


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 606 ASIFNHLKWQVIFSFRVIFLSCHFLIFLC 520
           A I+N++    IFS  ++ ++  FLIFLC
Sbjct: 15  ARIYNYIPHPSIFSNAILGIAWLFLIFLC 43


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 400 LSQQYPNLVYYMIVSSLSVSEYLNSICHNWILTFCKP-DWWCGGVCFIYVACISYFFPFL 224
           LS  Y +  YYM++++    EY+          + KP D W  GV   ++  +S + PF 
Sbjct: 178 LSHFYEDSQYYMLMTACGTPEYMAPEVFR-RTGYGKPVDMWAIGVITYFL--LSGYTPFA 234

Query: 223 -PTNLQVSSSTLAD 185
            P+ ++V  + LA+
Sbjct: 235 RPSQVEVIEAILAN 248


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 600 IFNHLKWQVIFSFRVIFLSCHFLIF 526
           IF +L W + FSFR   + C F  F
Sbjct: 193 IFQNLGWLIRFSFRKSIICCLFTPF 217


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 580 PLEMVEDAGRSNKDDMETEHL-ATLERLRQN 669
           P +  E AG +NKD +ET HL  T+  L  N
Sbjct: 12  PPDEEESAGLTNKDIVETNHLYPTITNLSLN 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,661
Number of Sequences: 5004
Number of extensions: 64077
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)