Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1037
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206...    30   1.8  
01_05_0299 - 20595919-20595963,20596111-20596221,20596901-205969...    29   4.1  
06_01_1143 - 9554338-9554983,9555004-9555746                           28   7.1  
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715...    28   7.1  
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093...    28   9.4  

>01_02_0111 -
           11220179-11220322,11220430-11220497,11220611-11220644,
           11220735-11220766,11220900-11220959,11221276-11221729
          Length = 263

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 461 HPAPPQHRVPSVTSNGLNLVQRKMRKWQLRKMTLKEKM-TCHLRWL 595
           HP PP  R   V +  +  V+R+M   +L   TLKE++ +   RWL
Sbjct: 69  HPPPPPLRRTHVAARLVERVRRRMSSSRLDTWTLKEEVASMDKRWL 114


>01_05_0299 -
           20595919-20595963,20596111-20596221,20596901-20596984,
           20597350-20597450,20597584-20598301
          Length = 352

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 639 FSDTRATETEPKAGLSIRQCVWQSPSHGQTHERSSGTY 752
           FSD    +T   +GLS+   +W SPS  +      G Y
Sbjct: 11  FSDQLRLQTASFSGLSLGDSIWSSPSDRRNEPAFDGEY 48


>06_01_1143 - 9554338-9554983,9555004-9555746
          Length = 462

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 536 KWQLRKMTLKEKMTCHLRWLKMLAVATRMTWKLNI*RH 649
           KW  R +TL++++   L ++K L  A   +W  N+ RH
Sbjct: 28  KWDDRLITLEKRVRNRLMYVKDLMDAGSRSWNENLIRH 65


>03_02_0939 +
           12571052-12571173,12571219-12571309,12571413-12571512,
           12571726-12571807,12571897-12571953,12572632-12572713,
           12572792-12572884,12573984-12574047,12574161-12574246,
           12574329-12574430,12574526-12574609,12574885-12574945,
           12575010-12575091,12575173-12575250,12575867-12575931,
           12576108-12576185,12576278-12576450
          Length = 499

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 524 RKMRKWQLRKMTLKEKMTCHLRWLKMLAVATRMTW 628
           R ++ W L   TLK  +T H+  ++ LAV+ R T+
Sbjct: 206 RTIKIWDLASGTLKLTLTGHIEQIRGLAVSQRHTY 240


>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
            29309566-29310123,29310199-29310258,29310839-29310904,
            29310993-29311103,29311167-29311257,29311349-29311449,
            29311534-29311641,29311737-29314205
          Length = 1289

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 616  KDDMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMKGAPGHIPFTSF 768
            KD +  E      R+ ++    Y+  S  GSL+A    +K    +IPF  F
Sbjct: 1026 KDAVMEEMTRVRNRIDKSGEGVYVQASTLGSLEALTEFLKSPAVNIPFCDF 1076


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,437,056
Number of Sequences: 37544
Number of extensions: 394480
Number of successful extensions: 956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)