Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1037
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       30   1.8  
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 254 NINETYPTTPPVWFAESEDPIVTNAVQILTNT--QGRDNHVINQVGILLRELCKLHGVP 424
           NI E+YP  PP+WF+ESED  VT  V+ +  +    +   ++ Q   L+REL K  G P
Sbjct: 406 NIYESYPDPPPMWFSESEDSTVTEIVESVGGSVDATQPKLLLRQTQHLVRELFKQRGSP 464



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +3

Query: 120 LKLEIKTLEQVFPKNHERFQIMSASVDELTCRFV-GKNGKKYEIH 251
           LK EI  LE+ F  ++++F++ +  +DEL CRFV   + +++ IH
Sbjct: 360 LKKEISVLEKTFGPHNKQFRVSANGLDELICRFVCPSSNEEHVIH 404


>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 51  LTWIETIYNKN*CSHTLMACLNTLKLEIKTLEQVFPKNH-ERFQIMSASVDELTCRFVGK 227
           L+ +E   NKN     L A ++TLKLE K L++  P N  +  QI S S D++ C   G+
Sbjct: 315 LSVVEQFSNKN---SRLEAEISTLKLENKQLKRQLPMNDGDNHQINSQSFDDV-CETNGR 370

Query: 228 N 230
           +
Sbjct: 371 H 371


>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 275 WGMFHLCCVYFIFLSIFAN 219
           W + H+ C  F+FL++FAN
Sbjct: 63  WYLIHVFCGLFMFLNVFAN 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,972,678
Number of Sequences: 59808
Number of extensions: 470089
Number of successful extensions: 1190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)