Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1037
         (769 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    29   0.16 
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    26   1.5  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   1.9  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    24   5.9  
AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long fo...    24   5.9  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   7.9  

>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 661  RQNQRQDYLSGSVSGSLQATDRLMKGAPGHIPFT 762
            +Q Q+Q Y   +  G++  T+ ++ GAP  +P T
Sbjct: 1051 QQQQQQQYAGSNAGGTVSTTNPVIGGAPALLPTT 1084


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 379 LVYYMIVSSLSVSEYLNSICHNWILTFCKPD-WWCGGVCFIYVACISYFFPFL 224
           LV ++I+  L +S Y   +     +   + D WW      + ++ IS+FFP +
Sbjct: 334 LVNFLILGLLVISAYEVILVVKRSMDIKESDSWWRRNEITVVMSLISFFFPMI 386


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 251 RNINETYPTTPPVWFAESED 310
           R + + +PT PPV++ E++D
Sbjct: 405 RIVTDLFPTHPPVYWPETDD 424


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 595 EDAGRSNKDDMETEHLATLERLRQNQRQDYLSGSVSGSLQA 717
           E       D++E   L   E   + Q  DYL   + G LQA
Sbjct: 99  ESEESEESDELEEARLVAEELEERQQELDYLKRYLVGRLQA 139


>AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long form
           protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 586 EMVEDAGRSNKDDMETEHLATLERLRQNQRQDYLSGSVSGSLQ 714
           E+V D    NK D+E E  + L         DY S  ++ S++
Sbjct: 228 EVVRDFNLINKSDLEPEVRSVLASCTGTHAYDYYSCLLNSSVK 270


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 625  CHPCCYGQHLQ 593
            CHP CY +H++
Sbjct: 1528 CHPYCYRRHMR 1538


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,034
Number of Sequences: 2352
Number of extensions: 16852
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79834176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)