Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1037
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 63 2e-10
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 31 1.2
AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein. 30 1.6
AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle defec... 30 1.6
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 30 2.1
U41995-4|AAU05579.1| 174|Caenorhabditis elegans Hypothetical pr... 29 4.8
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 29 4.8
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70287-2|CAA94298.2| 700|Caenorhabditis elegans Hypothetical pr... 28 8.4
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +3
Query: 102 MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHAT*MKHTP 275
MACL LK +I+ LE++FPKNH RFQI+SASVDEL+ +F+ K + A ++ P
Sbjct: 1 MACLRKLKEDIQVLEKLFPKNHNRFQILSASVDELSMKFINAENKGIIVTANIQENYP 58
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +2
Query: 248 TRNINETYPTTPPVWFAESED-PIVTNAVQILTNTQGRDNHVINQVGILLRELCKLHGV 421
T NI E YP PP+WF+ES+D P++ ++Q LT T+ N +++QV L+ +LC + +
Sbjct: 50 TANIQENYPRQPPIWFSESDDVPVIGMSLQRLTETEESTN-ILHQVHRLVSDLCSFYNL 107
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 583 LEMVEDAGRSNKD-DMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMK 735
+EM E+ S D + E L L+++ + RQ +L G V GS+ ATDRLMK
Sbjct: 170 VEMAEEDPTSQHDVGVSKEGLDMLDKVSKINRQQHLDGKVQGSITATDRLMK 221
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +3
Query: 102 MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHAT*MKHTP 275
MACL LK +I+ LE++FPKNH RFQI+SASVDEL+ +F+ K + A ++ P
Sbjct: 1 MACLRKLKEDIQVLEKLFPKNHNRFQILSASVDELSMKFINAENKGIIVTANIQENYP 58
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +2
Query: 248 TRNINETYPTTPPVWFAESED-PIVTNAVQILTNTQGRDNHVINQVGILLRELCKLHGV 421
T NI E YP PP+WF+ES+D P++ ++Q LT T+ N +++QV L+ +LC + +
Sbjct: 50 TANIQENYPRQPPIWFSESDDVPVIGMSLQRLTETEESTN-ILHQVHRLVSDLCSFYNL 107
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 583 LEMVEDAGRSNKD-DMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMK 735
+EM E+ S D + E L L++ + RQ +L G V GS+ A+DRLMK
Sbjct: 170 VEMAEEDPTSQHDVGVSKEGLDMLDKASKINRQQHLDGKVQGSITASDRLMK 221
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -1
Query: 706 CQTHCRIDSPAFGSVSVALVSLNVQFPCHPCCYGQHLQPSQV 581
CQT C +PA + Q C P C Q QP ++
Sbjct: 659 CQTACATQTPAVQAAPAPSCQPQCQPACEPVCIAQQAQPVRI 700
>AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein.
Length = 529
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 102 MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHA 254
+A + L+ E+K+LE F HE +++ + L R +YEIHA
Sbjct: 102 IALMRHLQSEVKSLETEFQTRHEDQRVLIEKICNLKKRLESDFEFEYEIHA 152
>AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle
defective protein 1 protein.
Length = 529
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 102 MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHA 254
+A + L+ E+K+LE F HE +++ + L R +YEIHA
Sbjct: 102 IALMRHLQSEVKSLETEFQTRHEDQRVLIEKICNLKKRLESDFEFEYEIHA 152
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 639 MFSFHVILVATASIFNHLKWQVIFSFR-VIFLSCHFLIFLCTRF 511
+FSF ++ VA ++NH++ + + R + + FL F C +F
Sbjct: 36 LFSFIIVCVALPIMYNHVQNTITYVDREMAYCEVRFLYFYCIKF 79
>U41995-4|AAU05579.1| 174|Caenorhabditis elegans Hypothetical
protein E02C12.13 protein.
Length = 174
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 209 LQVRWQKWKEI*NTRNINETYPTTPPVWFAESEDP 313
L++R + WK+I N RN+ TT V+ E+P
Sbjct: 133 LRIRREHWKKIRNLRNVEIEKITTKNVFKGRDEEP 167
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 99 LMACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGK--KYEIHAT*MKHT 272
L+ CL+ L+ K++ +VFP +F +++ F GKNG +E+ AT H+
Sbjct: 1183 LVHCLDITILKHKSMSEVFPP-IVKFNMVAYCSTSKRVAFGGKNGTCVVHELRAT-KTHS 1240
Query: 273 PPHHQSGLQKV 305
P H + V
Sbjct: 1241 LPSHNGPIAAV 1251
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 294 NQTGGVVGYVSFMLRVFHISFHFCQRTCRSVRRH*LTLSENVH 166
NQTGG+ +LR + C+R SV+ H + N H
Sbjct: 2030 NQTGGLTNVDRAVLRAAQTACDHCKRPGASVKCHKMNCGVNYH 2072
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 294 NQTGGVVGYVSFMLRVFHISFHFCQRTCRSVRRH*LTLSENVH 166
NQTGG+ +LR + C+R SV+ H + N H
Sbjct: 2030 NQTGGLTNVDRAVLRAAQTACDHCKRPGASVKCHKMNCGVNYH 2072
>Z70287-2|CAA94298.2| 700|Caenorhabditis elegans Hypothetical
protein R09E10.3 protein.
Length = 700
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 485 VPSVTSNGLNLVQRKMRKWQLRKMTLKEKMTCHLRWLKMLAVATRMTW 628
VP V V ++++ L+KM L + L KM ATR TW
Sbjct: 356 VPRVIDKIHKAVMKQVQDKPLKKMILNAAIAYKLYHYKMTGKATRKTW 403
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,770,438
Number of Sequences: 27780
Number of extensions: 363622
Number of successful extensions: 1131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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