Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1037
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   2.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   7.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 281 VWWGMFHLCCV 249
           ++W M+HLC V
Sbjct: 38  IYWSMYHLCTV 48


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 GVLVLHVVCIALAAISQPGLLHDCLV 354
           G LV+ ++C      S   LLH C++
Sbjct: 94  GELVMGILCKKTLGTSAGSLLHICML 119


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 408 NYMEYQNPQT*IHYPCQYIQR 470
           NY  Y N    +HY   YI++
Sbjct: 323 NYNNYNNNYKPLHYNINYIEQ 343


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = -2

Query: 588 LKWQVIFSFRVIFLSCHFLIF 526
           ++W++  +  V+++ C+F I+
Sbjct: 205 IRWELAGTLAVVWIMCYFCIW 225


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = -2

Query: 588 LKWQVIFSFRVIFLSCHFLIF 526
           ++W++  +  V+++ C+F I+
Sbjct: 258 IRWELAGTLAVVWIMCYFCIW 278


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -2

Query: 594 NHLKWQVIFSFRVIFLSC 541
           NH++W   F+     +SC
Sbjct: 507 NHIRWNSAFAIAPAVISC 524


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -2

Query: 594 NHLKWQVIFSFRVIFLSC 541
           NH++W   F+     +SC
Sbjct: 597 NHIRWNSAFAIAPAVISC 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,634
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)