Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1037
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53800.1 68414.m06123 expressed protein                             29   3.4  
At4g39930.1 68417.m05655 expressed protein                             29   4.5  
At1g08570.1 68414.m00950 thioredoxin family protein contains Pfa...    28   7.9  

>At1g53800.1 68414.m06123 expressed protein
          Length = 568

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 536 KWQLRKMTLKEKMTCHLRWLKMLAVATR 619
           +W  RK   K + TCH  W  +LA A +
Sbjct: 175 RWARRKERRKVQETCHFEWQNLLAEAAK 202


>At4g39930.1 68417.m05655 expressed protein 
          Length = 116

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 615 VATASIFNHLKWQVIFSFRVIFLSCHFLIFLCTRF 511
           + T+   +H+ WQ +     IF+   FL+FL  +F
Sbjct: 32  IETSDTQSHITWQALIGRPFIFVEKKFLLFLSKKF 66


>At1g08570.1 68414.m00950 thioredoxin family protein contains Pfam
           profile: PF00085 Thioredoxin; similar to ESTs gb|T46281,
           gb|R83933, gb|N65879, emb|F14466, gb|N96726,
           gb|AA042340, and emb|Z18150
          Length = 275

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 742 ELLS*VCPWLGDCQTHCRIDSPAFGSVSVALVSLNVQFPC 623
           E++S    +LG C  H R+D  +F  VS     L   F C
Sbjct: 3   EVISKTSLFLGACGNHHRVDDFSFSPVSFGGFGLKKSFSC 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,323
Number of Sequences: 28952
Number of extensions: 329629
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)