Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1036
         (771 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    40   0.091
UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    36   1.5  
UniRef50_Q7WYU1 Cluster: CirB protein; n=1; Clostridium beijerin...    34   4.5  

>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 39.5 bits (88), Expect = 0.091
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +1

Query: 202 LKLENGWTDLDNFSLELLWKSREGLK 279
           LKLENGWTDL NF LEL  + + GLK
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -2

Query: 374 KNKRIRPTGDTSKEKQNCLF 315
           + K IR TGDTSKEKQNC F
Sbjct: 48  QTKGIRQTGDTSKEKQNCYF 67


>UniRef50_Q7WYU1 Cluster: CirB protein; n=1; Clostridium
           beijerinckii|Rep: CirB protein - Clostridium
           beijerinckii (Clostridium MP)
          Length = 581

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +2

Query: 536 KYFKYYTYVSLKVYRHISITVSIYLKNSGEVKFLTLNFNFHVIRVVKNIVSQIRGRKRIK 715
           KY KYY       Y+H +I  +IYLK     K + L FN +   V+K++   I+G   +K
Sbjct: 292 KYIKYY-------YKHNNIIPNIYLKYINIHKKINLFFNSNNKLVLKDLNILIKGDNELK 344

Query: 716 IRSFNVNV 739
              F V +
Sbjct: 345 TNFFTVTL 352


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,112,922
Number of Sequences: 1657284
Number of extensions: 10652402
Number of successful extensions: 24747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24710
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)